Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2246 ATGGGTTCTCGAGGAAGATTATTATTTGATCTTAATGAACCCCCTGTCGAGGATAATGAAGATAGTGATGGTCTTGTCTTCCAGCCTCAGAAGGCTCAACCATCTTCAAATTCCCATGCTTCAGACTTATTTCCAGCATCAGGAGGTCCCCAGAGAATATTAAACAACCACGCATTTTCTCATGCATCTTCCGTATCAGGTTTTCAGCCTTTTATTCGTAGTAAACTTGGTTCTTATTCTGAAATGGGAGAAGAACAAAAGAAATTGTCTGATCAAAATTCAAAGATTGCATCATCATCTAAGTTAAGTAATGTTGAGACTGCAGCACACACATTGGTTTCAGGTGCTAGAGACACTCATTCAGTGGAAAGGGAAGAAGGAGAATGGTCTGATGCTGAGGGTTCTGCTGATATAAATGGAGGCATTGTTTTGCATAAGCAGTTAAAAACTTCACATGAGCAGGGCTTACTTTCTCCTTCACGGGTTGTTTCTGAGAACAATTCATGCAACACCAAAATTTCTGATAGTACTGTAGATAAGAGTAGTAATCACGTTCCTTCAACTTCGGATCCAGAGCCAAATGATCGGAAAAACAACAGTATCCAAAATACAGAAAGCAATGTTAAAGTTGATACATCCACAGACAGTGTTCAGGAAGAAACTGGGTTGCTTCCAAAACAAAGAGAAGTCAAGGGCATCGAAGCAAGTCATGCTCTTAAATGTGCTAATAACCCTGGAAAGAGGAAAGTAGATCAACATCTAGAAGCCAAGCTTGGGAAGAAACGTAATAGGCAGACAATGTTTCTTAATTTAGAAGATGTGAAGATGGCTGGGCCTATGAAAACTTCAACCCCTCGAAGGCAAACATTTCTACCTCCTACAACCACTCGCATTGTGAAGGAAGTCCATAATGCAACCCAAGTTAATGAACGTGTTGGGGAAAAACAGACTGTTAATAAAGACCAGAAACAAGGTGATGTTTCAAGCCATGAAGGAGGCATTTCCTCAGAATTTGGTGAATCAAAATTGGACAGTAATAGTGATATGAGTTCTGGATTACTAGCTCGGCCAAACAGGCCAAACAATGATGGAGATATCCCAGCAGAGGCATCCTTACCACCAATTCCTAGACAGGGTTCTTGGAAGATACCTACTGATTCAAGGTTGCAGAGGAATATGCAGGTCTCCAATAGGAAACCAGCTATATCTAATCAAAGTTCTGCTGACCATAAGCAGATAAATAAGAAACATCTTCCTGCCAAGAAGCAGAATTCTGTTAGTACTCATCAAGACTCATCGGTTGAACGACTTATACGGGAGGTGACCAATGAAAAGTTTTGGCATCACCCAGAGGAAACTGAACTCCAGTGTGTTCCTGGTCGGTTTGAATCTGTGGAAGAATACATCAGAGTGTTTGAACCTTTGTTATTTGAGGAATGCCGGGCTCAACTCTACAGTACATGGGAGGAACTCTTTGAACTCTCAAGAGATAATCAGCATGTGATGGTTCGCATCAAAAATATTGAAAGGAGAGAAAGAGGATGGTATGATGTAATAGTTCTTCCTGTGAACGAGTACAAGTGGTCATTCAAGGAGGGTGATGTGGCAGTTCTTTCATCCCCCAGACCTGGATCAGGCATATGCCAAGCATTTCGATCAAAGAGGAACAACACCATGTCTGTGGAGGATGATGAAGACCCTGAATCTGGGGGACGTGTGGCTGGAACTGTTCGACGACACATTCCCCTCGACACCCGTGATCCTCCAGGGGCTATTCTTCATTTTTATCTTGGGGACTCGTATGATCCTAATAGGAATGAAGAAGATCACATACTTAGAAAATTTCAGACAAAGGTTATTTGGTATGTAACAGTGCTTGGTTCTCTTGCAACTACCCAGCGAGAATATGTTGCCCTGCATGCATTTCGTCGGCTCAACATGCAGATGCAATCTTCAATTCTTCAGCCTAGTCCTGAGCAATTTCCGAAGTATGAGCAGCAGTCACCTGCTATGCCCGAGTGTTTCACGCAAAATTTTATTGAGCATCTGCGTAGGACCTTCAACGGACCCCAGCTATCTGCAATCCAATGGGCAGCAACGCATACGGCTGCTGGTACAAGCAGCGGGACAGTCAAGAGGCAAGAACCATGGCCTTTTACACTAGTACAAGGTCCTCCTGGAACAGGTAAGACACATACAGTTTGGGGAATGCTAAATGTTATCCATCTGGTTCAGTATCAGCATTACTATACTTCTTTGCTTAAGAAACTAGCACCAGAAAGCTATAAACAAGCTCATGAGAGCAGCTCAGAACATGTCACTACTGGATCCATTGATGAGGTACTCCAAAACATGGACCAGAATCTTTTCCGAACTCTTCCCACACTGTGTCCTAAACCTAGAATGTTGGTCTGTGCACCTTCGAATGCTGCAACAGATGAGCTTCTTGCTCGTGTTCTTGATCGGGGGTTTATTGATGGGGAAATGAAGGTGTATCGACCTGATGTGGCTCGAGTTGGTGTTGATTCACAAACTCGTGCTGCCCAAGCAGTTTCAGTTGAGCGTAGAACGGAGCAACTGTTGGTCAAAAGTCGAGATGAAGTCTTAAGATGGATGCACCAGCTAAAACTTCGTGAAACTCAATTATCTCAGCAAATCAGTAATCTTCAGAGAGAACTCAATGTTGCTGCTGCTGCTGTTCGCTCTCAAGGATCTGTTGGTGTTGACCCTGATGTTCTGGTGGCTCGTGACCAAAATCGAGACGCATTGTTGCAAAACCTTGCTGCTGTAATAGAAGGTAGGGATAAAATTCTAGTTGAGATGTCACGCCTCCTTATTTTAGAAGGCAGGTATCGATCTAACAGCAATTTCAATATGGAGGATGCACGAGCTAGTCTTGAGGCTAGTTTTGCCAACGAGGCTGAGATAGTTTTCACTACGGTATCAAGCAGTGGTCGCAAATTGTTTTCTCGACTCTCTCACGGTTTTGACATGGTAGTCATTGATGAGGCAGCCCAAGCCAGTGAGGTAGCTGTTCTTCCGCCGCTTGCTCTTGGTGCAGCTAGGTGTGTGCTTGTTGGAGATCCTCAGCAGCTCCCAGCCACAGTTATCAGTAAAGCAGCAGGAACATTGTTATACAGTAGAAGTCTCTTTGAAAGATTCCAGCAAGCAGGATGTCCCACTATGTTGTTATCAGTGCAGTACAGAATGCATCCTCAAATACGTGATTTCCCTTCAAGGTACTTCTACCAAGGACGCCTTTCTGACAGTGAAAGTGTTGCTAATTTACCTGATGAGACATACTATAAAGACCCTTTACTTAGACCTTACACTTTCTTTGATATCACACATGGGCGGGAATCTCATAGAGGGGGATCCGTTTCATATCAAAATATTCATGAAGCACAATTTTGTTTTCGTGTGTATGAACATCTACAGAAGACCGTGAAGTCATTAGGCATAGGTAAAGTTTCAGTTGGTATAATAACACCATACAAGCTCCAATTGAAGTGCCTCCAACGTGAGTTTGAGGAGGTTCTGAACTCTGAAGAAGGGAAGGATCTATATATTAATACTGTAGATGCTTTCCAAGGTCAAGAAAGGGATGTGATTATCATGTCTTGTGTGCGTGCCTCCATCCATGGCGTTGGCTTTGTTTCAGATATTCGTCGAATGAATGTAGCACTGACCCGTGCACGGAGGTCTCTTTGGGTAATGGGCAATGCTAATGCCTTGATGCAGTCTGATGATTGGGCTGCGTTGATCACTGATGCGAAGTCAAGGAATTGTTACATGGATATGGAATCTCTTCCCAAGGACTTCCTCGGACAGAAGAGATCCACTCAATCTACTTTGCCAGGGAAGAAATCTTCTAACATTAGGGGTCTGAGATCAGCTCTTCCAAGACATAGGACTCTGGATATACACATGGAGTCGAGGTCTGGAACACCATCAGAAGATGATGAGAAATCAAACTCTTTGGTAATCACTAGGAATGGAAATTACCGGCTTCCTAAGACTGCTGTAGAGAATTCCTCAGAAGACTTTGATCAGTCAGGTGACAAATTGAGAGATACTTGGCAATATGGTATGCAGAGAAGGCAAAGTTCTGCTGGTACTGTTGGGAAGAGAGATATTTAA 4140 43.26 MGSRGRLLFDLNEPPVEDNEDSDGLVFQPQKAQPSSNSHASDLFPASGGPQRILNNHAFSHASSVSGFQPFIRSKLGSYSEMGEEQKKLSDQNSKIASSSKLSNVETAAHTLVSGARDTHSVEREEGEWSDAEGSADINGGIVLHKQLKTSHEQGLLSPSRVVSENNSCNTKISDSTVDKSSNHVPSTSDPEPNDRKNNSIQNTESNVKVDTSTDSVQEETGLLPKQREVKGIEASHALKCANNPGKRKVDQHLEAKLGKKRNRQTMFLNLEDVKMAGPMKTSTPRRQTFLPPTTTRIVKEVHNATQVNERVGEKQTVNKDQKQGDVSSHEGGISSEFGESKLDSNSDMSSGLLARPNRPNNDGDIPAEASLPPIPRQGSWKIPTDSRLQRNMQVSNRKPAISNQSSADHKQINKKHLPAKKQNSVSTHQDSSVERLIREVTNEKFWHHPEETELQCVPGRFESVEEYIRVFEPLLFEECRAQLYSTWEELFELSRDNQHVMVRIKNIERRERGWYDVIVLPVNEYKWSFKEGDVAVLSSPRPGSGICQAFRSKRNNTMSVEDDEDPESGGRVAGTVRRHIPLDTRDPPGAILHFYLGDSYDPNRNEEDHILRKFQTKVIWYVTVLGSLATTQREYVALHAFRRLNMQMQSSILQPSPEQFPKYEQQSPAMPECFTQNFIEHLRRTFNGPQLSAIQWAATHTAAGTSSGTVKRQEPWPFTLVQGPPGTGKTHTVWGMLNVIHLVQYQHYYTSLLKKLAPESYKQAHESSSEHVTTGSIDEVLQNMDQNLFRTLPTLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQTRAAQAVSVERRTEQLLVKSRDEVLRWMHQLKLRETQLSQQISNLQRELNVAAAAVRSQGSVGVDPDVLVARDQNRDALLQNLAAVIEGRDKILVEMSRLLILEGRYRSNSNFNMEDARASLEASFANEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLALGAARCVLVGDPQQLPATVISKAAGTLLYSRSLFERFQQAGCPTMLLSVQYRMHPQIRDFPSRYFYQGRLSDSESVANLPDETYYKDPLLRPYTFFDITHGRESHRGGSVSYQNIHEAQFCFRVYEHLQKTVKSLGIGKVSVGIITPYKLQLKCLQREFEEVLNSEEGKDLYINTVDAFQGQERDVIIMSCVRASIHGVGFVSDIRRMNVALTRARRSLWVMGNANALMQSDDWAALITDAKSRNCYMDMESLPKDFLGQKRSTQSTLPGKKSSNIRGLRSALPRHRTLDIHMESRSGTPSEDDEKSNSLVITRNGNYRLPKTAVENSSEDFDQSGDKLRDTWQYGMQRRQSSAGTVGKRDI 1379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 87108535 87115258 - Hsped.01g22460.1 Hepe01g2246 561356

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2246 1379 MobiDBLite consensus disorder prediction 26 44 - -
Hepe01g2246 1379 MobiDBLite consensus disorder prediction 154 221 - -
Hepe01g2246 1379 Gene3D - 1068 1273 IPR027417 -
Hepe01g2246 1379 PANTHER DNA2/NAM7 HELICASE FAMILY 330 1373 IPR045055 -
Hepe01g2246 1379 MobiDBLite consensus disorder prediction 1308 1379 - -
Hepe01g2246 1379 MobiDBLite consensus disorder prediction 154 230 - -
Hepe01g2246 1379 MobiDBLite consensus disorder prediction 117 131 - -
Hepe01g2246 1379 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 717 1273 IPR027417 -
Hepe01g2246 1379 Pfam AAA domain 1046 1242 IPR041679 -
Hepe01g2246 1379 CDD SF1_C_Upf1 1070 1259 IPR047187 -
Hepe01g2246 1379 Gene3D - 609 1067 IPR027417 -
Hepe01g2246 1379 MobiDBLite consensus disorder prediction 306 434 - -
Hepe01g2246 1379 MobiDBLite consensus disorder prediction 1 51 - -
Hepe01g2246 1379 MobiDBLite consensus disorder prediction 383 409 - -
Hepe01g2246 1379 Coils Coil 872 899 - -
Hepe01g2246 1379 MobiDBLite consensus disorder prediction 92 110 - -
Hepe01g2246 1379 MobiDBLite consensus disorder prediction 79 136 - -
Hepe01g2246 1379 MobiDBLite consensus disorder prediction 328 357 - -
Hepe01g2246 1379 FunFam P-loop containing nucleoside triphosphate hydrolase 1068 1274 - -
Hepe01g2246 1379 MobiDBLite consensus disorder prediction 1308 1326 - -
Hepe01g2246 1379 MobiDBLite consensus disorder prediction 1327 1347 - -
Hepe01g2246 1379 CDD DEXXQc_SETX 687 1069 - -
Hepe01g2246 1379 Pfam AAA domain 692 1039 IPR041677 GO:0004386(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2246 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1003 Hepe-Chr1:74657995 Hepe01g2246 Hepe-Chr1:87108535 1.98e-19 dispersed
Hepe01g2246 Hepe-Chr1:87108535 Hepe02g1257 Hepe-Chr2:15707158 2.18e-80 dispersed
Hepe01g2246 Hepe-Chr1:87108535 Hepe06g1061 Hepe-Chr6:58861464 2.98e-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g383 . Blo12g00698 . Bda03g00500 Bpe02g00097 Bpe04g00455 . Bma01g02622 . . Cma01g01416 . . . . Cpe06g00511 . . . . . . . . . . . . . . . Cone4ag1352 Cone7ag1580 . . . Csa04g01843 . . . . . . . . . . Sed06g0283 Cmo01g01466 . . . . Car09g00579 . . Bhi09g02618 Tan01g3970 Cmetu10g0738 . Hepe01g2246 Mch11g0793 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006505 1 1 2 2 2 0 2 1 1 1 1 1 2 0 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37