Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2248 ATGGCAGCAGCCATGGATTTCTACAATGAAGGACCTCAAACAGACCACTTCGGTGGTGAACTAATGGAAGCAATTGTACCTTTTATTAAAGTTGCTTCCTCTCCCTCTGCGAATTTCCCATCTTCTTCTTCTTCTTCTTCTTCACCAACACCTTCTTTTCCTTCTTATTCTTATTCTTCTTCTTCCTTCAACTTCTCTGACTCAGTCTCTCAACAGTCCACTTTGTACTCAAATGGCTGCTTCACTTCGATGAACCCAGTATTTTCAGATGGGTTCTCGAATCAAAACCTCATTGGTTTCGAACAGCCATTCACAATTGGACCCCATCAGTTATCATCATCACCACAAATCTTCCATTCCCAACCTCAGATCAATCTTCTTCAAAATCAAAACCAAGTAGCTTTTGCTTGGGGGCAGCAACAAAGCCATCAACCACCACCACCACCACCTTGCTATGAACAACAAACGCCCAGCTTCCTCAGCCCCAAGCCGATCCCAATGAAGCAGGTGGGTTCGTCTTCAAAACCCACCAAGCTTTACAGAGGGGTAAGGCAGCGGCATTGGGGAAAATGGGTGGCCGAGATACGACTCCCACGGAACCGAACTCGGCTCTGGCTCGGTACCTTTGACACTGCTGAAGAAGCTGCCTTGGCGTATGACAAGGCAGCCTTCAAGCTCCGAGGGGACTCTGCCAGACTCAATTTCCCCCACCTCAAGCACCAAGGCTCCTTCGTTGAAGGCGAATTCGGCGAGTACAGACCTCTACATTCCTCAGTTGATGCAAAGCTCCAAGCAATTTGTGATAACTTGGCCAAGCCACAGAAACAAGGCAACTCAAAGAAGCCTGTTACTGCAGCTAAGAAGTCAAGGTCCCAATCCTGCTCCACGGCGGCCGAAACAGCAGCTGTGAAGGTGGAGAACTCCTCGTCGCTGGCTGTGACAGAGAGCGACGGGTCTGCAGCATCTTCACCTTTATCAGATCTTACATTCCCTGACTTCACAGAGTTGCCATGGGATCAGAATCAAGCTTGGGAGAATTCAATGCTAGAGAAATATCCTTCTGAGATAGATTGGGCATCGATCTTACCTTAA 1092 48.08 MAAAMDFYNEGPQTDHFGGELMEAIVPFIKVASSPSANFPSSSSSSSSPTPSFPSYSYSSSSFNFSDSVSQQSTLYSNGCFTSMNPVFSDGFSNQNLIGFEQPFTIGPHQLSSSPQIFHSQPQINLLQNQNQVAFAWGQQQSHQPPPPPPCYEQQTPSFLSPKPIPMKQVGSSSKPTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEEAALAYDKAAFKLRGDSARLNFPHLKHQGSFVEGEFGEYRPLHSSVDAKLQAICDNLAKPQKQGNSKKPVTAAKKSRSQSCSTAAETAAVKVENSSSLAVTESDGSAASSPLSDLTFPDFTELPWDQNQAWENSMLEKYPSEIDWASILP 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 87147045 87149010 + Hsped.01g22480.1 Hepe01g2248 561358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2248 363 SMART rav1_2 179 242 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2248 363 MobiDBLite consensus disorder prediction 156 176 - -
Hepe01g2248 363 Gene3D AP2/ERF domain 179 237 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2248 363 MobiDBLite consensus disorder prediction 272 292 - -
Hepe01g2248 363 FunFam Ethylene-responsive transcription factor 2 178 237 - -
Hepe01g2248 363 PRINTS Ethylene responsive element binding protein signature 180 191 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2248 363 PRINTS Ethylene responsive element binding protein signature 202 218 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2248 363 SUPERFAMILY DNA-binding domain 179 237 IPR016177 GO:0003677(InterPro)
Hepe01g2248 363 CDD AP2 178 238 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2248 363 ProSiteProfiles AP2/ERF domain profile. 179 236 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2248 363 Pfam AP2 domain 179 228 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe01g2248 363 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 16 361 IPR051758 GO:0005634(PANTHER)|GO:0043565(PANTHER)
Hepe01g2248 363 MobiDBLite consensus disorder prediction 139 176 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2248 Hepe-Chr1:87147045 Hepe04g1449 Hepe-Chr4:70152923 8.39e-72 dispersed
Hepe09g0313 Hepe-Chr9:2714129 Hepe01g2248 Hepe-Chr1:87147045 4.56e-19 dispersed
Hepe01g2248 Hepe-Chr1:87147045 Hepe10g0515 Hepe-Chr10:5945996 6.67e-96 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54899 PF00847 AP2 2.80E-15 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2248 K09286 - csv:101214560 545.043