Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2273 ATGTCTTTGAGCCCACCTCGACGGAGAAACAACAACAACCGCCATGCCAGAACCTTCCACCTCTACTGGTGCTACCAATGCAACCGGACGGTCACCCTCGCCGCCGCACACCCCTCGAGCCTCACCTGCCCCCGCTGTTTCGGGCAGTTCCTCGAAGAGCTCCACCTCGATCACTCGCCGGAGGCTCGTTTACTCGAAGCCCTCTCCCTAATGCTCCACCCGCCAGTTCGGCTCTTCAATTACAGACTCCCGGACATGGACCGCCACCGTCCACCGCCGCAACGGTTCGACGATTTGGACCGGCGACCGTTTAGTGACCCAGAAGGAGACGAATGGCTCCACTGGCGAACACGGCGGCGGCGCAATCGAAGCCTGGACGATAGAGACGAATCCGGGCTACAACCCCCAAATCCGAACCCGTCTCGGACTGTCATCATATTCAGACCCACAGACCAATCTCGGCCGATTCGGCCAATAATACCACCGAGATCAGCCGATCCAAGAGACTACTTCGCCGGACCACAACTCGACGACTTAATCCAAGAGCTGACGCAGAACGACAGGCCGGGTCCGGCGCCGGCGAGCGAGGCGGCGATAGAGGGGATACCGACGGTGAAGATAACGGCAGAGCATCTGAAGAACAACGACTCGATGTGTCCAGTTTGTAAGGAGGAGTTTGAGGTGGGAGGAGAGGCAAGGGAATTGAACTGCAAGCATATATACCATTCGGAGTGCATAGTGCCATGGCTACGCCTTCACAACTCTTGTCCGGTTTGCAGGCAAGAGCTGCCGCCATTGCCGCCGGAGAATGAAGCGGCGGTGAGCTCTGAAGATGGAGAAGGGATTGGGAGAAGATGTGCCAGGTGGTGGGGTCAATTTGTGTCTAGGCCATTTCGAAATAGGTATAGGCAGATTAGCCCTCCAAGTCCACCCAACCGCTTCAATGCTTCTAGTTCTCGAGAAAATAATTCATGGGGTGGTTCGTCCTACCTCTCCTCCTTAGCCCTTCTAATGTCGATGTTTATGCTGCAAATAACTTGGATTTTACTTGAACCTCTTCGTTAG 1065 55.59 MSLSPPRRRNNNNRHARTFHLYWCYQCNRTVTLAAAHPSSLTCPRCFGQFLEELHLDHSPEARLLEALSLMLHPPVRLFNYRLPDMDRHRPPPQRFDDLDRRPFSDPEGDEWLHWRTRRRRNRSLDDRDESGLQPPNPNPSRTVIIFRPTDQSRPIRPIIPPRSADPRDYFAGPQLDDLIQELTQNDRPGPAPASEAAIEGIPTVKITAEHLKNNDSMCPVCKEEFEVGGEARELNCKHIYHSECIVPWLRLHNSCPVCRQELPPLPPENEAAVSSEDGEGIGRRCARWWGQFVSRPFRNRYRQISPPSPPNRFNASSSRENNSWGGSSYLSSLALLMSMFMLQITWILLEPLR 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 87327404 87329394 + Hsped.01g22730.1 Hepe01g2273 561383

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2273 354 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 13 264 - GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Hepe01g2273 354 SUPERFAMILY RING/U-box 201 266 - -
Hepe01g2273 354 MobiDBLite consensus disorder prediction 301 325 - -
Hepe01g2273 354 FunFam E3 ubiquitin-protein ligase RING1-like 181 266 - -
Hepe01g2273 354 MobiDBLite consensus disorder prediction 134 148 - -
Hepe01g2273 354 MobiDBLite consensus disorder prediction 305 325 - -
Hepe01g2273 354 MobiDBLite consensus disorder prediction 83 103 - -
Hepe01g2273 354 Pfam Ring finger domain 218 260 IPR001841 -
Hepe01g2273 354 ProSiteProfiles Zinc finger RING-type profile. 219 260 IPR001841 -
Hepe01g2273 354 MobiDBLite consensus disorder prediction 124 168 - -
Hepe01g2273 354 Pfam zinc-ribbon 21 54 IPR039525 GO:0061630(InterPro)
Hepe01g2273 354 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 181 266 IPR013083 -
Hepe01g2273 354 SMART ring_2 219 259 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2273 K11982 - - csv:101215288 437.958
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2273 Hepe-Chr1:87327404 Hepe04g0546 Hepe-Chr4:58141318 1.17e-39 dispersed
Hepe01g2273 Hepe-Chr1:87327404 Hepe05g0737 Hepe-Chr5:14115724 5.94e-38 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g291 . Blo12g00673 . Bda03g00531 . Bpe04g00485 . . . . . Cma09g00804 . . . Cpe06g00639 . . . . . . . . . . . . . . . Cone4ag1390 . . . Lsi04g02380 Csa04g01892 . . . . . . . . . . . . Cmo09g00797 . . . Car09g00720 . . Bhi09g02658 . . . Hepe01g2273 Mch11g0820 . Cla11g01527 . . . . . . . . Chy07g00659 Cme07g00866
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007071 1 5 1 0 1 0 2 1 0 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 0 1 1 1 2 1 35