Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2295 ATGCAGATAGCTATGTTAAAAAGTTCGTGTAAATTGGCACTTAAAGACCTCAGGCGTTGGATGACCCCAGAAAAGGTTAAAACTTCAATTACCACATTTCCTTCGTCGGCTGCAATTGTACCAGAACCTTTCGGTGTTGTCCTGATCATTTCTGCTTGGAATTATCCATTCTTGTTATCTCTTGATCCAGTTGTTGGAGCAATAGCAGCTGGTAATGCTGTGGTTCTAAAGCCATCAGAAATTTCCCCAGCAACATCATCTTTAATGGCAAAACTTCTAGGGAAATATTTGGATACTTCTGCTGTAAAAGTTGTTGAGGGTGCTGTTTCCGAAACTAGTGCTTTGTTGGAGCAAAAGTGGGACAAGATATTTTACACAGGCAATGGAAGAGTGGGGCGAATAGTGATGGCAGCTGCTGCCAAGCACCTTACACCAGTTGTTCTAGAGCTTGGAGGAAAGTCTCCAGTAGTAGTTGATTCAGAAATCAATTTGCAGGTTGCGAGTAAGCGAATTGTTGTTGGTAAGTGGGGCTGTAACAATGGACAAGCGTGCATTGCTCCTGATTATATCATAACTACAAAAGAATTTGCTCCAAAATTGGTGGAGTCTCTGAAAAAAGAACTGGAGAGATTTTACGGAAAGAATCCGTTGGAATCGAAAGATATATCTCGCGTTGTGAATGGCAACCACTTTGATCGCTTGACAAAGCTCTTAGATGATGACAAAGTTTCTGGCAAGATTGTGCATGGAGGTGAAAAGGACAAAACCAAATTACAGATTGCTCCCACCCTCTTATTGGATGTCCCTCGAGACTCCCTGATTATGACGGAGGAGATCTTTGGTCCCTTACTTCCCATTATCACGGTAGACAAAGTGGAGGATAGCTTCGACGTAGTGAACTCGGGCACAAAGCCGCTTGCAGCATATTTATTTACCAACAACAAAAGGCTCAAGGAACGGTTCGTGGCTCGTATCTCTGCAGGGGGTGTGGTTATCAATGACATCGCCTTACATCTGACAGTTAGCACACTACCATTTGGAGGAATTGGGGATAGTGGAATGGGAGCTTACCATGGGAAGTTCTCATTTGATGCATTCAGCCATAAGAAGGCTGTTCTTTATCGAAGCTTCGCAGGCGATGCGGCGATGAGATACCCGCCATACACGAAGGGAAAGCTGAGAATTCTCAAGGCTCTTCTTGGAGGTGGCATAATGGGAATCATTCGTGCTCTTCTTGGATGGTCGTAA 1248 43.99 MQIAMLKSSCKLALKDLRRWMTPEKVKTSITTFPSSAAIVPEPFGVVLIISAWNYPFLLSLDPVVGAIAAGNAVVLKPSEISPATSSLMAKLLGKYLDTSAVKVVEGAVSETSALLEQKWDKIFYTGNGRVGRIVMAAAAKHLTPVVLELGGKSPVVVDSEINLQVASKRIVVGKWGCNNGQACIAPDYIITTKEFAPKLVESLKKELERFYGKNPLESKDISRVVNGNHFDRLTKLLDDDKVSGKIVHGGEKDKTKLQIAPTLLLDVPRDSLIMTEEIFGPLLPIITVDKVEDSFDVVNSGTKPLAAYLFTNNKRLKERFVARISAGGVVINDIALHLTVSTLPFGGIGDSGMGAYHGKFSFDAFSHKKAVLYRSFAGDAAMRYPPYTKGKLRILKALLGGGIMGIIRALLGWS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 87556561 87563137 + Hsped.01g22950.1 Hepe01g2295 561405

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2295 415 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 2 370 IPR016162 GO:0016491(InterPro)
Hepe01g2295 415 PANTHER ALDEHYDE DEHYDROGENASE 2 414 IPR012394 GO:0004029(PANTHER)|GO:0005737(PANTHER)|GO:0006081(PANTHER)|GO:0006081(InterPro)
Hepe01g2295 415 Pfam Aldehyde dehydrogenase family 34 372 IPR015590 GO:0016491(InterPro)
Hepe01g2295 415 SUPERFAMILY ALDH-like 5 387 IPR016161 GO:0016491(InterPro)
Hepe01g2295 415 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 148 155 IPR029510 GO:0016491(InterPro)
Hepe01g2295 415 FunFam Aldehyde dehydrogenase 1 155 - -
Hepe01g2295 415 PIRSF ALDH 1 406 IPR012394 GO:0006081(InterPro)
Hepe01g2295 415 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 152 352 IPR016163 GO:0016620(InterPro)
Hepe01g2295 415 FunFam Aldehyde dehydrogenase 152 352 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2295 K00128 - - csv:101219329 750.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2295 Hepe-Chr1:87556561 Hepe07g0686 Hepe-Chr7:8067223 3.74e-146 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g247 . Blo12g01125 . Bda03g00014 . Bpe04g00009 Bma04g00013 . . . Cma01g01383 Cma09g00785 . . . Cpe06g00619 . . . . . . . . . . . . . . . Cone4ag1417 Cone7ag1521 . . Lsi04g02401 Csa04g01789 . . . . . . . . . . . Cmo01g01433 Cmo09g00776 . . . Car09g00694 . Cpe02g00556 Bhi09g02693 . . . Hepe01g2295 Mch11g0839 . Cla11g01542 Cam11g1605 Cec11g1633 Cco11g1636 Clacu11g1762 Cmu11g1578 Cre11g1996 . . Chy07g00628 Cme07g00835
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0747 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 71.8 2.3e-214 741.9
Hepe10g0002 . 31 560 Aldehyde Dehydrogenase Gene Family AT3G24503 51.8 8.1e-159 557.4
Hepe09g0192 . 62 546 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 4.9e-156 548.1
Hepe09g0192 . 1 546 Aldehyde Dehydrogenase Gene Family AT3G48000 79.7 8.2e-258 886.3
Hepe10g0002 . 1 560 Aldehyde Dehydrogenase Gene Family AT3G48000 71.9 3.1e-241 831.2
Hepe09g0747 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.3 3.1e-164 575.5
Hepe10g0002 . 1 404 Aldehyde Dehydrogenase Gene Family AT1G23800 72.3 1.6e-165 579.3
Hepe09g0192 . 1 396 Aldehyde Dehydrogenase Gene Family AT1G23800 72.2 1.0e-164 576.6
Hepe09g0747 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 3.6e-104 375.6
Hepe01g2295 . 2 415 Aldehyde Dehydrogenase Gene Family AT4G34240 65.9 1.1e-161 567.0
Hepe07g0686 . 5 477 Aldehyde Dehydrogenase Gene Family AT4G34240 50.1 1.4e-132 470.3
Hepe01g2295 . 3 413 Aldehyde Dehydrogenase Gene Family AT1G44170 72.7 6.3e-181 630.6
Hepe07g0686 . 61 475 Aldehyde Dehydrogenase Gene Family AT1G44170 50.6 4.9e-117 418.3
Hepe08g0118 . 66 482 Aldehyde Dehydrogenase Gene Family AT1G44170 50.6 4.9e-117 418.3
Hepe07g0686 . 1 477 Aldehyde Dehydrogenase Gene Family AT4G36250 63.5 3.0e-187 651.7
Hepe08g0118 . 4 484 Aldehyde Dehydrogenase Gene Family AT4G36250 55.5 2.5e-157 552.4
Hepe08g0653 . 32 536 Aldehyde Dehydrogenase Gene Family AT1G79440 76.8 2.5e-235 811.6
Hepe08g0652 . 32 379 Aldehyde Dehydrogenase Gene Family AT1G79440 75.9 6.8e-156 547.7
Hepe02g0702 . 5 489 Aldehyde Dehydrogenase Gene Family AT2G14170 82.5 1.1e-236 816.2
Hepe04g1389 . 177 645 Aldehyde Dehydrogenase Gene Family AT2G14170 65.5 1.5e-183 639.8
Hepe09g0167 . 8 397 Aldehyde Dehydrogenase Gene Family AT1G74920 81.0 6.7e-198 687.2
Hepe09g0167 . 8 399 Aldehyde Dehydrogenase Gene Family AT3G48170 83.9 2.8e-204 708.4
Hepe08g2460 . 1 493 Aldehyde Dehydrogenase Gene Family AT2G24270 89.5 7.1e-264 906.4
Hepe07g2286 . 21 462 Aldehyde Dehydrogenase Gene Family AT5G62530 81.3 5.2e-223 770.8
Hepe03g0048 . 39 595 Aldehyde Dehydrogenase Gene Family AT3G66658 75.5 3.3e-260 894.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002493 2 3 2 2 2 0 3 2 0 2 1 2 3 2 2 3 2 3 3 2 1 1 1 1 1 2 1 3 2 2 56