Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2309 ATGGCTATGGACGATACCGAGAGCTGTAGTAGTAGAGCGGTAGACGATTTTTCGTTTCAGACTTGGAGACAGAAGCAGAAGGTTGGTGTTTACGACGAAGTACTTCGTCGACTCAGGCTGTCGCACGAGGCGGAGACCAGCGTTCCTGGTTTTGAGGATGAACTTTGGGCTCATTTTCATCGCCTTCCTACTAGGTATGCTATGGACGTTAACGTAGAGAGGGCTGAAGATGTTCTCGTGCACAAAAATCTTCTCTATATGGCACATGATCCTGCTACTCGACCTGCGATTGATGTCCGTCTCGTACAGGTTCATTCATCTCCTGGTGCAAACTCTGGCAAGCCTGTTCATTCAAACTTGAAGGAAAAAGTGGACCAGCGGTTTTCTGATTATGACAGCAATCAGAGACACCACCCACCACCAGCATTTGGTTCATCAACGGAGGTCGAATATGGTTATGAGACCAGCCAATTACATGATATAGATCAGCCTGCCACTTTCTCCTGGCCAATGCATGAAATTACAATATCAACAATTGACAAGCCAAAATTACTCAGTCAGTTGACGTCCTTACTTTCTGAGATTGGGCTGAATATTCAAGAAGCGCATGCTTTTTCAACAACAGATGGCTTTTCCTTGGATGTTTTTGTAGTTGATGGTTGGGCAATTGAGGATACCAAGCAGCTAAAGGATATACTGGCTGAAGAAATATCAAAGATTCAGAAAAGGCATCCTCTTTTTACACCTTGGAGCATTTCCCCTACTGGGAAGAAAGACAAAATTGGAGTCAAGTTCATCACAACTTATGTCAACATTCCAAGGGACGAAGTTGATGTATGGGAAATTGATGCGAGCCTGTTAATCTATGAGAAGAAAATTGCGTCTGGATCTTTTAGTGACTTGTATAAAGGCACTTTCTATGGTCAAGATGTGGCTATTAAGCTTCTAAAAGATGAAAACTTGAATGAGACTGTACGGCGGGAATTTGCTCAAGAAATTCATATCATGAGAAAAATTCGGCATAAGAATGTTGTCCAATTTATTGGTGCATCTACCAGACCTCCAAGCTTTTTCATTGTTACAGAATACATGTCTGGTGGAAGCATGCACGACTTCTTACATCAACAAAAGAGAGTTCTTAGTTTTCCTTCCTTACTAAGAGTGGCAATTGACGTGTCCAAGGGAATGAACTATTTGCATCAAAAGAATATCATCCATAGAGATCTGAAAGCTGCAAATCTTTTGGTGGACGAAGATGGGGTTGTCAAGGTAGCTGATTTTGGTGTTGCCAGAGTGCAAGCTCAATCTGGTGTGATGACTGCAGAAACTGGAACATATCGTTGGATGGCTCCAGAGGTTATTGAGCACAAACCATATGATCATAAAGCTGATGTTTACAGCTTTGGGATAGTGTTGTGGGAGCTGCTTACAGGACAGCTTCCTTATGATAACCTAACTCCGTTACAAGCAGCAATAGGCGTGGTCCAGAAGGGTCTTCGGCCTAAGATCCCGAGGCATGCTCATCCAATGATGGTGAATTTGCTCGAGAAATGCTGGCGGCAGGATCCATCTTTGAGACCCGAATTTTCTGAAATTACCAAACTTCTACAGCAGATGGTCATCAAGGAGGAGCCATCGGGAAGATGA 1647 43.29 MAMDDTESCSSRAVDDFSFQTWRQKQKVGVYDEVLRRLRLSHEAETSVPGFEDELWAHFHRLPTRYAMDVNVERAEDVLVHKNLLYMAHDPATRPAIDVRLVQVHSSPGANSGKPVHSNLKEKVDQRFSDYDSNQRHHPPPAFGSSTEVEYGYETSQLHDIDQPATFSWPMHEITISTIDKPKLLSQLTSLLSEIGLNIQEAHAFSTTDGFSLDVFVVDGWAIEDTKQLKDILAEEISKIQKRHPLFTPWSISPTGKKDKIGVKFITTYVNIPRDEVDVWEIDASLLIYEKKIASGSFSDLYKGTFYGQDVAIKLLKDENLNETVRREFAQEIHIMRKIRHKNVVQFIGASTRPPSFFIVTEYMSGGSMHDFLHQQKRVLSFPSLLRVAIDVSKGMNYLHQKNIIHRDLKAANLLVDEDGVVKVADFGVARVQAQSGVMTAETGTYRWMAPEVIEHKPYDHKADVYSFGIVLWELLTGQLPYDNLTPLQAAIGVVQKGLRPKIPRHAHPMMVNLLEKCWRQDPSLRPEFSEITKLLQQMVIKEEPSGR 548
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 87687402 87693643 + Hsped.01g23090.1 Hepe01g2309 561419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2309 548 Coils Coil 223 243 - -
Hepe01g2309 548 ProSiteProfiles ACT domain profile. 173 250 IPR002912 -
Hepe01g2309 548 SUPERFAMILY ACT-like 171 238 IPR045865 -
Hepe01g2309 548 PANTHER SERINE-THREONINE PROTEIN KINASE 138 539 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Hepe01g2309 548 Gene3D Phosphorylase Kinase; domain 1 280 365 - -
Hepe01g2309 548 CDD STKc_MAP3K-like 293 536 - -
Hepe01g2309 548 PRINTS Tyrosine kinase catalytic domain signature 398 416 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g2309 548 PRINTS Tyrosine kinase catalytic domain signature 507 529 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g2309 548 PRINTS Tyrosine kinase catalytic domain signature 463 485 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g2309 548 PRINTS Tyrosine kinase catalytic domain signature 361 374 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g2309 548 PRINTS Tyrosine kinase catalytic domain signature 444 454 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g2309 548 FunFam Serine/threonine-protein kinase isoform 1 276 365 - -
Hepe01g2309 548 ProSiteProfiles Protein kinase domain profile. 287 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g2309 548 SUPERFAMILY Protein kinase-like (PK-like) 266 535 IPR011009 -
Hepe01g2309 548 SMART serkin_6 287 540 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g2309 548 Gene3D - 171 244 - -
Hepe01g2309 548 Gene3D Transferase(Phosphotransferase) domain 1 366 546 - -
Hepe01g2309 548 Pfam Protein tyrosine and serine/threonine kinase 289 535 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g2309 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 404 416 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1912 Hepe-Chr1:83912803 Hepe01g2309 Hepe-Chr1:87687402 2.01e-50 dispersed
Hepe01g2309 Hepe-Chr1:87687402 Hepe06g0891 Hepe-Chr6:56192594 1.37e-221 dispersed
Hepe05g1592 Hepe-Chr5:65543665 Hepe01g2309 Hepe-Chr1:87687402 2.45e-20 transposed
Hepe06g1491 Hepe-Chr6:65487371 Hepe01g2309 Hepe-Chr1:87687402 3.64e-22 transposed
Hepe01g2309 Hepe-Chr1:87687402 Hepe02g0398 Hepe-Chr2:3817020 9.00e-240 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72503 PF07714 PK_Tyr_Ser-Thr 3.60E-74 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2309 - - - 0.0