Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2311 ATGTCACCGCCGGCGAAGACTAAAACCTGGAACGGCGGCCTCGATAAGCAATACCCACCGGCCTTGGCCACACACGATGAAGTTATTTCCGACCCCACTGCTTTTTGGGACACTTTGAGGCGTTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAACTAGATTTGCATGTTTTATATTCAGAAGTTACAAGAAGGGGAGGCCATGAAAAGGTTGTTGCAGACAAGAAATGGAGGGAAGTTGGAAGTGTTTTCAAGTTTTCTCCTACGACGACAAGTGCTTCTTTTGTATTGAGGAAACATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTACATGTTCGGCCGGCAGGGCCCCATCTGTTCTCCCCAAGCAACATTTTCTTTTGGTAGCCCTACAAGCGAAAACGAATTGGCTCTGGTAGAATATACTCCCAAAACAACGTCGTTTTCGCCTGGTCCGCCTTCTGAAGTTACTGGAACAATTGATGGGAAATTCGACAGTGGTTATTTGGTGACTGTGAAAGTGGGGTCTGAGGTTCTGAGAGGAGTGCTTTACCATCCAGACCAGCCAGCTCCGTCGGATCCACGGCCGCAGTCTACCAATGCCATTGTACCGTACACCGGTGGTAGACATCGACATGCTGGTCGACGGCACCGGAGGAGCCGGAGAAAGGGAGACCCGAACCACCCGAAACCAAACAGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTCAAATCTTTGTACCCAAACAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAACAATCTCGGCCCTGATGAAAGGATGGTTTATCAAAACATTGGGCTGAAAGACAAGGAAAGATACAAGCGAGAGTTGAAAGAGTACAAGGAGAAATTAAGGCAGGCAACTGATAATCTTCCAGCTAACTATTCAAAACATGGAGAGTAG 975 46.56 MSPPAKTKTWNGGLDKQYPPALATHDEVISDPTAFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVADKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYMFGRQGPICSPQATFSFGSPTSENELALVEYTPKTTSFSPGPPSEVTGTIDGKFDSGYLVTVKVGSEVLRGVLYHPDQPAPSDPRPQSTNAIVPYTGGRHRHAGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLGPDERMVYQNIGLKDKERYKRELKEYKEKLRQATDNLPANYSKHGE 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 87744095 87745718 - Hsped.01g23110.1 Hepe01g2311 561421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2311 324 SMART ARID_2 26 116 - -
Hepe01g2311 324 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677(InterPro)
Hepe01g2311 324 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Hepe01g2311 324 SUPERFAMILY ARID-like 25 127 IPR036431 GO:0003677(InterPro)
Hepe01g2311 324 SUPERFAMILY HMG-box 235 309 IPR036910 -
Hepe01g2311 324 Gene3D - 23 128 IPR036431 GO:0003677(InterPro)
Hepe01g2311 324 Coils Coil 291 314 - -
Hepe01g2311 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 16 313 - -
Hepe01g2311 324 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677(InterPro)
Hepe01g2311 324 SMART bright_3 30 121 IPR001606 GO:0003677(InterPro)
Hepe01g2311 324 MobiDBLite consensus disorder prediction 218 235 - -
Hepe01g2311 324 CDD HMG-box_AtHMGB9-like 238 304 - -
Hepe01g2311 324 Pfam ARID/BRIGHT DNA binding domain 33 116 IPR001606 GO:0003677(InterPro)
Hepe01g2311 324 Gene3D High mobility group box domain 222 317 IPR036910 -
Hepe01g2311 324 SMART hmgende2 237 306 IPR009071 -
Hepe01g2311 324 MobiDBLite consensus disorder prediction 194 245 - -
Hepe01g2311 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2311 Hepe-Chr1:87744095 Hepe03g0356 Hepe-Chr3:5115783 2.65e-82 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54904 PF01388 ARID 1.90E-18 CL0123 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2311 - - - 0.0