Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2324 ATGGCGGTCCACGGCGGCGAAGTGGATCCAAGAAGCGGCTTCTGCCACTCCACAAAAATCTTCCACAGCAAACGCCGCCCAATCCCACTTCCCCCAAACCAATCCCTCGACGCGACGTCGTTTATCTCTTCCCGCCCCCACAACGGCAAAATCGCTCTCATCGACGCCACCACCGGCCACCACATCACCTATTCCCAACTCTGGCAATCCGTCGATTCCGTCGCCGCTTCTCTCTCCGACATCGGCATCCGAAAAGGCCACGTCATCCTCCTCCTCTCCCCGAACTCCATTTCCTTCCCCATCATTTGCCTCGCCGTCATGTCCCTCGGCGCCATAATCACCACCACAAATCCCCTAAATACCTCTCAAGAAATCGCCAAACAGATCGCCGATTCAAAACCCATCTTAGCCTTCACGACCCAACAATTAATTCCCAAAATCGCGAGTTCTAATTTGCCAATCGTCCTAATCGACGGCCAATCTCAAAACCCACAAGTCAAAATCGTCTCCAATTTAACGGAAATGATGAGGAAAAAACCAAGCGGGAGTCGAATTAAGGAACGGATTGAGCAAAACGACACAGCGACTCTGCTTTATTCCTCTGGAACGACAGGTGCGAGCAAGGGCGTAGTGTCGTCTCACAAAAATATAATCGCGATGGTTCAAGTCGTCGTGACGAGATTCAATTTGAGCGAAGGAGAAGGAACTTTTATCTGTACGGTGCCGATGTTTCATATTTATGGGCTTGTAGCTTTCGCGACGGGGCTGCTTTCTTCCGGATCGACGATTGTCGTTCTGTCGAAATTCGAAATTCATGAGATGTTGTCGGCGATTGAGAAGTATAAGGCGACATATTTGCCTCTTGTGCCACCGATTCTGGTGGCGTTGGTGAACGCCGCCGAGCAGATTAAAGGGAAGTACGATTTGGGGTCGTTGCACACGGCGCTGTCCGGAGGAGCGCCGCTGGGGAAGGAAGTGATTGAGGGTTTTGTTAAGAAGTTTCCGAATGTTGCGATTCTTCAGGGCTATGGATTGACGGAGTCCACTGGAATTGGGGCCTCCACTGATTCGTTGGAGGAGAGCCGCCGGTACGGCACGGCGGGGCTTCTGTCGCCGAGTACTGAGGGAATGATTATTGACCCGGAAACCGGCGAGGCTCTACCTGTGAACCGGACCGGGGAGCTTTGGCTTAGAGGGCCCACCGTTATGAAAGGATATTTTGGTAATGTGGAGGCCACAACCTCAACACTTGATTCAGAGGGATGGTTGAGAACTGGTGATTTGTGTTATATTGATGAAGATGGTTTTATTTTTGTGGTTGATAGGCTCAAGGAACTCATCAAATATAAGGGTTATCAGGTGCCTCCTGCAGAATTAGAGGCGCTGTTACTTACTCATCCTAATATCTCTGATGCAGCTGTGATTCCATTTCCAGACAAAGAGGTTGGGCAATATCCAATGGCTTACGTGGTAAGAAAGGGTGGAAGTGACATTTCACATGAAGATGTAATGCAATTCGTGGCAAAACAGGTGGCACCGTACAAGAGAATCCGGCGGGTGGCGTTCGTGGAGTCCATTCCCAAGAATCCGTCCGGTAAGATTCTGAGAAAGGATCTCATAAAGCTCGCAACCTCCAAACTCTGA 1644 50.3 MAVHGGEVDPRSGFCHSTKIFHSKRRPIPLPPNQSLDATSFISSRPHNGKIALIDATTGHHITYSQLWQSVDSVAASLSDIGIRKGHVILLLSPNSISFPIICLAVMSLGAIITTTNPLNTSQEIAKQIADSKPILAFTTQQLIPKIASSNLPIVLIDGQSQNPQVKIVSNLTEMMRKKPSGSRIKERIEQNDTATLLYSSGTTGASKGVVSSHKNIIAMVQVVVTRFNLSEGEGTFICTVPMFHIYGLVAFATGLLSSGSTIVVLSKFEIHEMLSAIEKYKATYLPLVPPILVALVNAAEQIKGKYDLGSLHTALSGGAPLGKEVIEGFVKKFPNVAILQGYGLTESTGIGASTDSLEESRRYGTAGLLSPSTEGMIIDPETGEALPVNRTGELWLRGPTVMKGYFGNVEATTSTLDSEGWLRTGDLCYIDEDGFIFVVDRLKELIKYKGYQVPPAELEALLLTHPNISDAAVIPFPDKEVGQYPMAYVVRKGGSDISHEDVMQFVAKQVAPYKRIRRVAFVESIPKNPSGKILRKDLIKLATSKL 547
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 87826885 87830319 - Hsped.01g23240.1 Hepe01g2324 561434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2324 547 CDD 4CL 30 539 - -
Hepe01g2324 547 FunFam Long-chain-fatty-acid--CoA ligase FadD 22 444 - -
Hepe01g2324 547 Pfam AMP-binding enzyme C-terminal domain 458 533 IPR025110 -
Hepe01g2324 547 Gene3D - 18 444 IPR042099 -
Hepe01g2324 547 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 14 539 - GO:0005777(PANTHER)|GO:0016405(PANTHER)
Hepe01g2324 547 Gene3D - 445 546 IPR045851 -
Hepe01g2324 547 Pfam AMP-binding enzyme 47 407 IPR000873 -
Hepe01g2324 547 FunFam 4-coumarate--CoA ligase 2 445 546 - -
Hepe01g2324 547 SUPERFAMILY Acetyl-CoA synthetase-like 44 545 - -
Hepe01g2324 547 ProSitePatterns Putative AMP-binding domain signature. 197 208 IPR020845 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1063 Hepe-Chr1:75353911 Hepe01g2324 Hepe-Chr1:87826885 1.39e-150 dispersed
Hepe01g2324 Hepe-Chr1:87826885 Hepe07g2135 Hepe-Chr7:65667156 2.32e-162 dispersed
Hepe01g2324 Hepe-Chr1:87826885 Hepe06g1813 Hepe-Chr6:69210885 1.92e-155 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2324 K10526 - csv:101221396 986.097