Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2338 ATGGCTGGATCGGATGAGAACAACCCGGGTGTGATTGGACGGGCAAATCTCCATGGGGGTTTACGAATTGGTGGTGGTGGCGGTGGCAAATTTGTGGTGGGGGCTGGTCAAACCCGCAGAGCTTTGAGCAATATTAATGGCAATGTTGCAGCAGCTCCTCCCCTTCATCCCTGTGCAGTCCTCAAAAGAGGCCTAACTGAAACTGATGTTGTTCTCAACAACAAAAAAGACCCACCGATTCCGATTCATCGTCCGATCACTCGGAAGTTTGCAGCTCAACTGGCCAATAAGCAGCCGCCACCTGTCCCTGTGGTTGATAAAAAGATACTGCAACAATCTGCCCCAACTCGAACAGAGTCTTCAGATCATCGTCATCTTCCCATCATAGAGGAAGATGATTCTATGGCAGAATCAGCAGTGCCAATGTTCGTTCAACACACAGAAGCAATGTTGGACGAAATTGACAGAATGGAGGAAGTGGAAATGGAAGATATAGAAGAAGAGGAAGTCATGGACATAGACGGCTGCGATAAGAAGGATCCACTAGCTGTTGTGGAGTACATTGATGACTTGTATACTTACTACAGGAAAGCTGAGGTTTCTGGTTGTGTCCCGCCAACCTACATGGCTCAGCAAGCAGATATTAACGAGAAAATGAGAGGGATTCTTATTGACTGGCTAATTGAGGTACACTACAAGTTTGAGCTGATGGAGGAGACATTGTACCTAACAGTCAACCTGATCGATAGATTCTTAGCGGTTCACTCGGTGGTGAGGAAGAAGCTCCAGCTTGTTGGAGTGACGGCCATGCTTATTGCCTGCAAGTATGAAGAAGTTTCTGTTCCTATTGTGGATGATCTTATTCTCATATCTGACAAGGCCTACAGCCGCAAAGAAGTTCTGGACATGGAGAAGTTGATGATAAATACCTTACAGTTCAATCTGTCTGTTCCAACACCTTATGTCTTCATGAAGAGGTTTCTCAAAGCTGCTCAATCAGATAGAGAGATGGACCTGCTGTCATTCTTCATGGTGGAGCTTTGTCTAGTGGAATGTGGAATGCTGAAGTATAGGCCTTCATTAATGGCTGCTGCTGCAGTCTTCACTGCTCAATGTACAATCAATGGCTTCACAGAATGGAGTAAAACCAGTGAGTGGCACACTGGATATTCTCAAGACCAGCTTCTGGAATGTTCACGTTTGATGGTGGAGTTACATCAGACAGCAGGGACAGGGAAATTGACAGGAGTTCACAGAAAATATTGCACTTCCAAGTTTGGATATGCTGCTAGGAGTGAGCCAGCAAGATTTCTGTTGGAAGAAAGGCTATAA 1332 45.57 MAGSDENNPGVIGRANLHGGLRIGGGGGGKFVVGAGQTRRALSNINGNVAAAPPLHPCAVLKRGLTETDVVLNNKKDPPIPIHRPITRKFAAQLANKQPPPVPVVDKKILQQSAPTRTESSDHRHLPIIEEDDSMAESAVPMFVQHTEAMLDEIDRMEEVEMEDIEEEEVMDIDGCDKKDPLAVVEYIDDLYTYYRKAEVSGCVPPTYMAQQADINEKMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVHSVVRKKLQLVGVTAMLIACKYEEVSVPIVDDLILISDKAYSRKEVLDMEKLMINTLQFNLSVPTPYVFMKRFLKAAQSDREMDLLSFFMVELCLVECGMLKYRPSLMAAAAVFTAQCTINGFTEWSKTSEWHTGYSQDQLLECSRLMVELHQTAGTGKLTGVHRKYCTSKFGYAARSEPARFLLEERL 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 87913705 87916522 - Hsped.01g23380.1 Hepe01g2338 561448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2338 443 Pfam Cyclin, N-terminal domain 190 316 IPR006671 -
Hepe01g2338 443 SUPERFAMILY Cyclin-like 179 315 IPR036915 -
Hepe01g2338 443 Gene3D - 204 316 - -
Hepe01g2338 443 Gene3D - 190 429 - -
Hepe01g2338 443 SUPERFAMILY Cyclin-like 317 434 IPR036915 -
Hepe01g2338 443 ProSitePatterns Cyclins signature. 220 251 IPR048258 -
Hepe01g2338 443 SMART cyclin_7 322 404 IPR013763 -
Hepe01g2338 443 SMART cyclin_7 225 309 IPR013763 -
Hepe01g2338 443 SMART Cyclin_C_2 318 435 IPR004367 -
Hepe01g2338 443 CDD CYCLIN_AtCycB-like_rpt1 173 313 - -
Hepe01g2338 443 FunFam G2/mitotic-specific cyclin-1 305 430 - -
Hepe01g2338 443 CDD CYCLIN_AtCycB-like_rpt2 318 434 - -
Hepe01g2338 443 PANTHER CYCLINS 163 422 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe01g2338 443 Pfam Cyclin, C-terminal domain 318 434 IPR004367 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2338 Hepe-Chr1:87913705 Hepe04g1666 Hepe-Chr4:71896627 2.46e-154 dispersed
Hepe01g2338 Hepe-Chr1:87913705 Hepe01g2047 Hepe-Chr1:85134402 9.72e-52 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2338 K21777 - csv:101223199 712.22