Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2345 ATGGGCGAGGTTTCGAAGACGACGATGAAGAAGAAGAAGAAGAAGGGGCGCCCTTCTCTTTTAGATCTCCAAAAGCGCTTCCTCAAGCAGCAAAAGTTGCAGGAACAGGATCAACAACCGCTTAATGCTTTCGACTTTGCCTCGAACCCTAGGAGCCCCTCCTCTTGTCGGGATCGCAATGTTGTCCCGGCGACAGACTGTTTTACCGGCGGTGACGACGACGACGACGAGCGCATTGAGAAGAAGCATAAGCCCTTGCTCGGTTTAACTTCTCGCCAAAACTATCCAACATTGTCCGCTTATTCTTTACGTAAATCGGCCTCCTACGGCGAAGCTTCCGAGGCGGCCCTCAAGCGTCCCAGAATCGGCGCTGCGCAGTTTGGATCTTATGAAGTGAGTGAAAAAAGTTTGAAAGCGACAGACACTGCGCATGGGTCGCAGGTGGAGTCTGGTCCCACGACAACTTTGCCAGACAAAAAGTTGTTGATTTTCATCCTTGATAGACTTCAAAAGAAAGATACCCATGGAGTATTTTCCGAACCTGTGGATTCAAACGAGCTTCCTGATTACCATGTTGTTATTGAGAATCCTATGGATTTTGGGACTGTGAGGACGAAATTAGATGGAGGAGCCTACGCAAATTTCGAACAGTTTGAGGAAGACATTCTTTTGATATGTTCAAATGCAATGAAGTATAACCCTCCCGATTCAGTTTTCTTCCGTCAGGCACGATCCATACAAGAACTTGCGAAGAAGGATTTTGAGAATTTGAGGCGAGAAAGCAGTTCTGAAAGTGAACCAGAACAGAAAGTTGTGAGGAGAGGTAGGCCACCAGGAAAGAGCCAGAAGAGATCTCTAGGTCTTGATAACCCTATTGAAAGCATTGGGGCAGAGTTTTGCTCAGGTGCTACTCTTGCTTCTGGATGTGATGATTCCAACAACGTCAATGGTTACAATTTGAGAAAAGCACGTTCTTCCTTTCGGCCCGTGCCTGCAGATCCTCTAGTTAGGACATCCACAGCTCAACATGGCGAAACTTTGGCCAGCTGGTTGCCTGAATGGAAAAATGAGTTTCCAGCTTCAGTTTTCAAGGGTGTTCTTAAAAGTGGAAAGAATGTTAATATGGCTGTGGATGAGAATCGACGTGATACCTATAATCATTCACTGTCTTGTGGGAATTGGCCATCTGTCTTTGGTAACCTTGATGGAAACTTGAAGCAACTAATTACTGTAGGTTTGCATGCTGAGCATGGTTATGCAAGAAGCCTAGCTCTCTTTGCAGCCGATCTTGGTCCTGTGGTTTGGAAGATTGCTTGTAAGAAAATTGAAAGTATTAGTCGGGAGCTGGGGCGAGTATTGATACAAGAATTGGAAATGCTACAGCAGCAACGCATGTTGCCTGTGGATAAAGGCTCATCTGACATGATAACAGTGGCGGAGAGCACGGGTATTCTTCCATGTAGAAGCATACCTGGCTTTAACATTGGTATTTCAAATAATTTTTCTAAACATGATGAAGATGCTGAAATGAACAGAGTGAGAAATTCCCAAAGCGAGACAATGTTGATAGACAGAAGTAGAGGTGTGATAGGATCTACAACTTGTATACCGAACGAGCAGAAAACGATAGTTCCTTCAAACATTCACCGCACAAATGGTGTTTTTTTCCCCCATTTTTCACAAGAAATGAGAATGGTAAGACTTGATGCCATTGTAGGAGGGACGTCTTGTTCAGACGACTCTTCAGTGCCTTGTACATCTTCAGCTTTCAACAATGCTTCTTTCCAAATCCCTGCTGGTGCTGGTGATATGGATTTCCTAAGCCAAGCAGAAATGCCAAAACTTGCAGAAGATGGCTCTCAGTCACACTTTCAGCGGCATTCACTGGCCCGTGTATACTTTCAGGAGTCGATCAAAACACAACAAGAGGAGGGGGTTGGTGAAAAGGCACGTTGGCAAGAATTATCAACTCATCCTGTGCTAGATCCAATCACCTTTAATCCTGACCTTAATTTTGGATTAGGCTTATCTCCTGCACCCAGTTCGAATCTGCAGATTCTTTCGCAAATTCAACCAGATTTAGTATTGCAGCTCTGA 2097 44.83 MGEVSKTTMKKKKKKGRPSLLDLQKRFLKQQKLQEQDQQPLNAFDFASNPRSPSSCRDRNVVPATDCFTGGDDDDDERIEKKHKPLLGLTSRQNYPTLSAYSLRKSASYGEASEAALKRPRIGAAQFGSYEVSEKSLKATDTAHGSQVESGPTTTLPDKKLLIFILDRLQKKDTHGVFSEPVDSNELPDYHVVIENPMDFGTVRTKLDGGAYANFEQFEEDILLICSNAMKYNPPDSVFFRQARSIQELAKKDFENLRRESSSESEPEQKVVRRGRPPGKSQKRSLGLDNPIESIGAEFCSGATLASGCDDSNNVNGYNLRKARSSFRPVPADPLVRTSTAQHGETLASWLPEWKNEFPASVFKGVLKSGKNVNMAVDENRRDTYNHSLSCGNWPSVFGNLDGNLKQLITVGLHAEHGYARSLALFAADLGPVVWKIACKKIESISRELGRVLIQELEMLQQQRMLPVDKGSSDMITVAESTGILPCRSIPGFNIGISNNFSKHDEDAEMNRVRNSQSETMLIDRSRGVIGSTTCIPNEQKTIVPSNIHRTNGVFFPHFSQEMRMVRLDAIVGGTSCSDDSSVPCTSSAFNNASFQIPAGAGDMDFLSQAEMPKLAEDGSQSHFQRHSLARVYFQESIKTQQEEGVGEKARWQELSTHPVLDPITFNPDLNFGLGLSPAPSSNLQILSQIQPDLVLQL 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 87990182 87994784 - Hsped.01g23450.1 Hepe01g2345 561455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2345 698 MobiDBLite consensus disorder prediction 255 288 - -
Hepe01g2345 698 MobiDBLite consensus disorder prediction 1 61 - -
Hepe01g2345 698 Gene3D - 154 276 IPR036427 GO:0005515(InterPro)
Hepe01g2345 698 MobiDBLite consensus disorder prediction 255 275 - -
Hepe01g2345 698 SMART bromo_6 151 259 IPR001487 GO:0005515(InterPro)
Hepe01g2345 698 MobiDBLite consensus disorder prediction 33 59 - -
Hepe01g2345 698 PANTHER BROMODOMAIN CONTAINING PROTEIN 9 697 IPR051831 -
Hepe01g2345 698 Pfam Bromodomain 165 244 IPR001487 GO:0005515(InterPro)
Hepe01g2345 698 CDD Bromodomain 158 254 - -
Hepe01g2345 698 ProSitePatterns Bromodomain signature. 175 232 IPR018359 -
Hepe01g2345 698 PRINTS Bromodomain signature 203 221 IPR001487 GO:0005515(InterPro)
Hepe01g2345 698 PRINTS Bromodomain signature 221 240 IPR001487 GO:0005515(InterPro)
Hepe01g2345 698 PRINTS Bromodomain signature 173 186 IPR001487 GO:0005515(InterPro)
Hepe01g2345 698 PRINTS Bromodomain signature 187 203 IPR001487 GO:0005515(InterPro)
Hepe01g2345 698 ProSiteProfiles Bromodomain profile. 170 240 IPR001487 GO:0005515(InterPro)
Hepe01g2345 698 SUPERFAMILY Bromodomain 150 260 IPR036427 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2345 K22184 - - csv:101217603 1005.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1265 Hepe-Chr1:77936887 Hepe01g2345 Hepe-Chr1:87990182 3.41e-60 dispersed
Hepe01g2345 Hepe-Chr1:87990182 Hepe04g1956 Hepe-Chr4:74427357 2.30e-13 dispersed
Hepe01g2345 Hepe-Chr1:87990182 Hepe02g0368 Hepe-Chr2:3453572 6.21e-90 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g88 . . . Bda03g00322 . Bpe04g00283 Bma04g00289 . . . Cma01g02019 . Car01g01587 . . . . . . . . . . . . . . . . . . Cone4ag2023 Cone7ag1940 . . Lsi04g01811 Csa04g02708 . . . . . . . . . . Sed13g2199 Cmo01g02077 . . . . . . Cpe02g00031 Bhi09g02875 Tan01g5115 Cmetu07g1520 . Hepe01g2345 Mch11g0053 . Cla11g01827 Cam11g1894 Cec11g1919 Cco11g1927 Clacu11g2058 Cmu11g1863 Cre11g2270 . . Chy07g00397 Cme07g00050
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011763 1 1 0 1 1 0 1 0 0 1 1 1 1 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 26