Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe01g2347 | ATGATGATGGAGTGGCAGAACAACCAAACTGAGCAATTGCAAATGGAAATGCAAATGCAAATGCAGGTGGAGCAATTGAGCAACGGCGATGGAGTTGGTGGTGGGCTGTATGTCAAGGTGATGACAGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCCGTCTATGCTTCCATTTGTCAGCAGCTTGTGGAGATGCACAAGGCAATCACCGCCCAGCAGGACCTTGCTGGAATGAGGCTAGGGAATCTGTACTGTGATCCAATAATGGCATCTGCTATTGGCCACAAGATAACTGCTAGGCAGAGGTGGACGCCCACTCCTGTACAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCACTGGAACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGTCAAATTTCGGAAGCAAATGTTTATAATTGGTTTCAAAACAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCACTACCAAATAATGGAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCATACTTATGAACAGTTTGTTTCGAAGTCGAGCAACATGTATTCTCAGAGATCTGATTTAGATTCTGAAATGCTCTCCTTTGATGCCCAATCAAATAAAGCGGAGCCCATGTTTCAGTCTTTTGGATCTGGTCATATCAGTCAGATGAACCCAACACAGAATCATAGAAATAATCTGTCAAATGATAAAATGAACGTACCAGACTACACTCCTTACCCACCTTGTGAAGGATATCAGTTGGTTGAGTGA | 825 | 43.52 | MMMEWQNNQTEQLQMEMQMQMQVEQLSNGDGVGGGLYVKVMTDEQMELLRQQISVYASICQQLVEMHKAITAQQDLAGMRLGNLYCDPIMASAIGHKITARQRWTPTPVQLQILEQIFDEGTGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSLPNNGDSEPETEVDSPKEKKTKPETFHTYEQFVSKSSNMYSQRSDLDSEMLSFDAQSNKAEPMFQSFGSGHISQMNPTQNHRNNLSNDKMNVPDYTPYPPCEGYQLVE | 274 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 88001366 | 88003320 | + | Hsped.01g23470.1 | Hepe01g2347 | 561457 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe01g2347 | 274 | CDD | homeodomain | 101 | 163 | IPR001356 | GO:0003677(InterPro) | |
Hepe01g2347 | 274 | SMART | HOX_1 | 99 | 166 | IPR001356 | GO:0003677(InterPro) | |
Hepe01g2347 | 274 | PANTHER | WUSCHEL-RELATED HOMEOBOX 13 | 3 | 246 | IPR044559 | GO:0003700(InterPro) | |
Hepe01g2347 | 274 | MobiDBLite | consensus disorder prediction | 157 | 191 | - | - | |
Hepe01g2347 | 274 | MobiDBLite | consensus disorder prediction | 176 | 191 | - | - | |
Hepe01g2347 | 274 | SUPERFAMILY | Homeodomain-like | 100 | 163 | IPR009057 | - | |
Hepe01g2347 | 274 | ProSiteProfiles | 'Homeobox' domain profile. | 97 | 162 | IPR001356 | GO:0003677(InterPro) | |
Hepe01g2347 | 274 | MobiDBLite | consensus disorder prediction | 234 | 257 | - | - | |
Hepe01g2347 | 274 | MobiDBLite | consensus disorder prediction | 234 | 274 | - | - | |
Hepe01g2347 | 274 | Pfam | Homeodomain | 101 | 161 | IPR001356 | GO:0003677(InterPro) | |
Hepe01g2347 | 274 | Gene3D | - | 103 | 167 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g2347 | Hepe-Chr1:88001366 | Hepe06g0871 | Hepe-Chr6:55817721 | 1.21e-58 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54907 | PF00046 | Homeodomain | 2.00E-17 | CL0123 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe01g2347 | - | - | - | 0.0 |