Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2347 ATGATGATGGAGTGGCAGAACAACCAAACTGAGCAATTGCAAATGGAAATGCAAATGCAAATGCAGGTGGAGCAATTGAGCAACGGCGATGGAGTTGGTGGTGGGCTGTATGTCAAGGTGATGACAGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCCGTCTATGCTTCCATTTGTCAGCAGCTTGTGGAGATGCACAAGGCAATCACCGCCCAGCAGGACCTTGCTGGAATGAGGCTAGGGAATCTGTACTGTGATCCAATAATGGCATCTGCTATTGGCCACAAGATAACTGCTAGGCAGAGGTGGACGCCCACTCCTGTACAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCACTGGAACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGTCAAATTTCGGAAGCAAATGTTTATAATTGGTTTCAAAACAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCACTACCAAATAATGGAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCATACTTATGAACAGTTTGTTTCGAAGTCGAGCAACATGTATTCTCAGAGATCTGATTTAGATTCTGAAATGCTCTCCTTTGATGCCCAATCAAATAAAGCGGAGCCCATGTTTCAGTCTTTTGGATCTGGTCATATCAGTCAGATGAACCCAACACAGAATCATAGAAATAATCTGTCAAATGATAAAATGAACGTACCAGACTACACTCCTTACCCACCTTGTGAAGGATATCAGTTGGTTGAGTGA 825 43.52 MMMEWQNNQTEQLQMEMQMQMQVEQLSNGDGVGGGLYVKVMTDEQMELLRQQISVYASICQQLVEMHKAITAQQDLAGMRLGNLYCDPIMASAIGHKITARQRWTPTPVQLQILEQIFDEGTGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSLPNNGDSEPETEVDSPKEKKTKPETFHTYEQFVSKSSNMYSQRSDLDSEMLSFDAQSNKAEPMFQSFGSGHISQMNPTQNHRNNLSNDKMNVPDYTPYPPCEGYQLVE 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 88001366 88003320 + Hsped.01g23470.1 Hepe01g2347 561457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2347 274 CDD homeodomain 101 163 IPR001356 GO:0003677(InterPro)
Hepe01g2347 274 SMART HOX_1 99 166 IPR001356 GO:0003677(InterPro)
Hepe01g2347 274 PANTHER WUSCHEL-RELATED HOMEOBOX 13 3 246 IPR044559 GO:0003700(InterPro)
Hepe01g2347 274 MobiDBLite consensus disorder prediction 157 191 - -
Hepe01g2347 274 MobiDBLite consensus disorder prediction 176 191 - -
Hepe01g2347 274 SUPERFAMILY Homeodomain-like 100 163 IPR009057 -
Hepe01g2347 274 ProSiteProfiles 'Homeobox' domain profile. 97 162 IPR001356 GO:0003677(InterPro)
Hepe01g2347 274 MobiDBLite consensus disorder prediction 234 257 - -
Hepe01g2347 274 MobiDBLite consensus disorder prediction 234 274 - -
Hepe01g2347 274 Pfam Homeodomain 101 161 IPR001356 GO:0003677(InterPro)
Hepe01g2347 274 Gene3D - 103 167 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2347 Hepe-Chr1:88001366 Hepe06g0871 Hepe-Chr6:55817721 1.21e-58 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54907 PF00046 Homeodomain 2.00E-17 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2347 - - - 0.0