Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2347 ATGATGATGGAGTGGCAGAACAACCAAACTGAGCAATTGCAAATGGAAATGCAAATGCAAATGCAGGTGGAGCAATTGAGCAACGGCGATGGAGTTGGTGGTGGGCTGTATGTCAAGGTGATGACAGATGAGCAAATGGAGCTTCTCAGGCAGCAGATCTCCGTCTATGCTTCCATTTGTCAGCAGCTTGTGGAGATGCACAAGGCAATCACCGCCCAGCAGGACCTTGCTGGAATGAGGCTAGGGAATCTGTACTGTGATCCAATAATGGCATCTGCTATTGGCCACAAGATAACTGCTAGGCAGAGGTGGACGCCCACTCCTGTACAGCTTCAAATTCTTGAGCAGATCTTTGATGAGGGCACTGGAACCCCAAGCAAGCAGAAGATCAAGGATATAACTCTACAGCTGACACAACATGGTCAAATTTCGGAAGCAAATGTTTATAATTGGTTTCAAAACAGAAGGGCTCGTTCAAAAAGAAAGCAAGCAAATTCACTACCAAATAATGGAGACTCAGAACCAGAGACAGAAGTTGATTCTCCAAAGGAGAAAAAGACTAAACCAGAAACCTTCCATACTTATGAACAGTTTGTTTCGAAGTCGAGCAACATGTATTCTCAGAGATCTGATTTAGATTCTGAAATGCTCTCCTTTGATGCCCAATCAAATAAAGCGGAGCCCATGTTTCAGTCTTTTGGATCTGGTCATATCAGTCAGATGAACCCAACACAGAATCATAGAAATAATCTGTCAAATGATAAAATGAACGTACCAGACTACACTCCTTACCCACCTTGTGAAGGATATCAGTTGGTTGAGTGA 825 43.52 MMMEWQNNQTEQLQMEMQMQMQVEQLSNGDGVGGGLYVKVMTDEQMELLRQQISVYASICQQLVEMHKAITAQQDLAGMRLGNLYCDPIMASAIGHKITARQRWTPTPVQLQILEQIFDEGTGTPSKQKIKDITLQLTQHGQISEANVYNWFQNRRARSKRKQANSLPNNGDSEPETEVDSPKEKKTKPETFHTYEQFVSKSSNMYSQRSDLDSEMLSFDAQSNKAEPMFQSFGSGHISQMNPTQNHRNNLSNDKMNVPDYTPYPPCEGYQLVE 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 88001366 88003320 + Hsped.01g23470.1 Hepe01g2347 561457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2347 274 CDD homeodomain 101 163 IPR001356 GO:0003677(InterPro)
Hepe01g2347 274 SMART HOX_1 99 166 IPR001356 GO:0003677(InterPro)
Hepe01g2347 274 PANTHER WUSCHEL-RELATED HOMEOBOX 13 3 246 IPR044559 GO:0003700(InterPro)
Hepe01g2347 274 MobiDBLite consensus disorder prediction 157 191 - -
Hepe01g2347 274 MobiDBLite consensus disorder prediction 176 191 - -
Hepe01g2347 274 SUPERFAMILY Homeodomain-like 100 163 IPR009057 -
Hepe01g2347 274 ProSiteProfiles 'Homeobox' domain profile. 97 162 IPR001356 GO:0003677(InterPro)
Hepe01g2347 274 MobiDBLite consensus disorder prediction 234 257 - -
Hepe01g2347 274 MobiDBLite consensus disorder prediction 234 274 - -
Hepe01g2347 274 Pfam Homeodomain 101 161 IPR001356 GO:0003677(InterPro)
Hepe01g2347 274 Gene3D - 103 167 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2347 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2347 Hepe-Chr1:88001366 Hepe06g0871 Hepe-Chr6:55817721 1.21e-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g82 Blo01g01638 . . Bda03g00324 Bpe02g00305 . Bma04g00291 Bma01g02412 . . Cma01g02023 Cma09g00047 Car01g01590 . . Cpe06g00017 . . . . . . . . . . . . . . . . . . . Lsi04g01814 Csa04g02711 . . . . Bda11g00976 . . . . . Sed01g2425 Cmo01g02079 Cmo09g00049 . . . Car09g00039 . Cpe02g00030 Bhi09g02871 Tan01g5120 Cmetu07g0405 . Hepe01g2347 Mch11g0050 . Cla11g01830 Cam11g1897 Cec11g1922 Cco11g1932 Clacu11g2061 Cmu11g1866 Cre11g2274 . . Chy07g00400 Cme07g00048
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe07g2356 . 1 201 Wox Gene Family AT3G18010 55.6 2.4e-48 189.9
Hepe01g2347 . 2 191 Wox Gene Family AT4G35550 63.3 7.1e-61 231.1
Hepe08g1298 . 5 160 Wox Gene Family AT1G46480 63.0 7.1e-47 184.1
Hepe07g2356 . 1 201 Wox Gene Family AT3G18010 55.6 2.4e-48 189.9
Hepe08g1298 . 5 160 Wox Gene Family AT1G46480 63.0 7.1e-47 184.1
Hepe01g2347 . 2 191 Wox Gene Family AT4G35550 63.3 7.1e-61 231.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001223 3 4 2 3 2 1 4 1 1 2 2 2 4 2 2 3 1 2 3 1 2 2 2 2 2 2 1 8 3 3 72
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54907 PF00046 Homeodomain 2.00E-17 CL0123 Hepe TF