Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2350 ATGGCCGATGACATTCGCAGATGGGTTACCGAATTCTTACTCCGAAGTTCCGAAGTGGATGATCTCTTGCTGAAGAGAGTTCTCTCCGTTATCGACGCTTCCGACTGGGATTTCCGCCTGAAGAAAGCGGCGCTTTTAAAGGCCGTTGAGTGCGAAATCTTGGGAAACACTGTTACTGAGCATTTACTCGAAATTTTTGAGATTATTGAACAGTTCGATAAGGATCAAGGCCATACAATTCCGGAGTCTCTGAAAGCTGCTTATTGTGCCGTGGCTGTGGAATGCACGATGATGTTCTTTCCAGTCAGAGGCATTGGCAAGCAGGTGACCTATTCGGAAGCTGTGAGCAACATTTGGAGTGGGAGAGTCACTGAATTGGAGACAGCCGGGATGAGTGAGTTGGTTTCACCGGAATTGAAGGCAACAAAGAAGGAGCTAGAAGCCACCCTCTCGGATGGTGAAGGTTGGAAGAAGCTGGTGAAATTGAATACCAAATACCAAGCTTTGAAACGTACTCATGATTACCTGATTGAGGCACGAGCTTCTCTTGGCCAGCCATTCCTTGAATTTGCAGCAACAGTGGAATGGCGAGAAACATCAGACGGGCTAACAACGGAAGGGCAGGAAACAACTCAAGTGCAAACATTGGTTGGGACGGAGGTTGAAGTTTTGGACAATCCAGGCTCAAGCCAAGGTGTTTCTGAATCAGTTGCAATGGAGGTCGGACTTTTGGACAATCCAAGTCCAAGCCGAGGTGTCTCTGGTAAACCCCTTGCATCTCATAGACGTGTTAGAGCGGCTAAAATTAGTCATCCAGTGGACTTGGAGAATGATGTTTCGTCTGAAAAATATACTTGCCTACATACTCCTGAGGTTAACCGGGCGCGAGAAGCTCTTAAAGCCAGCACTTTAGAGTTGCAAGCAGTGGTGAAAGATCCACTCCCAGATGCATTACGCATTGCAGAATCGGTAGCTCACGATCTTGCTCAAAAGAATAAAATTAGTGAGCATTCGATGGAGGACCAAAATGGTGCAGGTGCCTCTAATCCAGTCATTACCAAGGGTGCTTTGCCTCTTCAATCTGTGAGTTCAGCTTCTGCGTCTGAGCAAAATAATTCAATAGATAAGGTAAGCAGACTTCACCTCCCGAGTCCCAAGAGAAAGAACTTTTCTCCCCTGAAGAAGTATGTAGATACCAAGTTTGTTCGGAGAAGGACGAGGAGGAACTGGAGCTTGCTTGAAGAAGACACCTTGCGAACCGCTGTGCAAAAGTATGGTAAAGGAAATTGGAAGCTCATCCTAAATGCCCATCGTGATGTATTTGAAGAGAGAACCGATGTTGATCTCAAGGATAAGTGGAGGAATATGACCCGGAGAGCCGATTTGGATGGCGATGGAAGGATTAGTGGAGCTGAAGCTGTCGCTTTCTTTCAGGCCTCCAATTTGCCTAAAAATGTTCTTGCGCAGATATGGATGCATGCTGATCAGAGAAAAACAGGTTTCCTTGGTCGACCAGATTTTTATAATGCTCTCAGACTCGTAACTGTTGCTCAAAGTAAGCGAGAGCTAACACCTGAAATTGTCAAGGCAGCACTATATGGTCCTGCTGCAGCGAAAATCCCCCCACCAAAGATTGATCTTCCCGCTGTAGCTGCCCCTCAATCAACTTCAGTGCCTGCTGCATCTTCTCCACAGATGAGTATACCTGCACCAACGGCTTCTCAAAATTTTGGCTTTAGAGGACAAGGGGTTCCAAATGTGGGTGTGAATCAGCAGTATCTTTCAGCCCAACCAAACCCTTCCATGAGGTTACCTCAAGCCACACCTGGTGGTGTTGCTTCCAATACACAACTGGTTATTGCTGCTTCTGAACCCTCTGGAGGAGGAAACGTACTGGGTTCAAATCTTCCAAACCCAAATGATTGGCTCAGTGGAAGGTCAGGTGGTGCCCCTGCTGCTGGGCCTAGAGGAGTTAGCCCTTCAATGCCTTCCCCAGCTACATTGTTATCATCAGCTTTAGTGCCTTCACAGCCTATGCCTAATGATAGAGCACCAGCTGTTACTGGTAATGGATTTGCTTCTAAGTCGGCATTTGGTGCTGACATGTTTTCTGTTACTCCATCTCCACCTAGACCAGAATCTTCTGGACTCAACAATGCAGCTAATAATAGTTTTGGCCCATCAGCCATTGTTCCAGTTCCCAGTGTATCCCAACCTTTAAGTAAGCACAACTCAATGGAGTCATTGCAGAGTACATTTGTTTCAAGGCCATTATCTGGTGGACAGTTTCAGCTCTCTCAGTCATCACTGGAACCTAGCAAGGAGGTTAGAGCAACAGGTCCATCACCACTTATATCTTCTGGGATCACATCTGGAGCCAGGAACTCTACATCTGAAAATGCGGCTACTTGGCCAAAGATGAAACCAACTGATGTTCAGAAGTACACAAAAGTTTTTATGGAAGTAGATACTGACAGAGACGGTAGAATTACCGGTGATCAGGCACGGAATCTTTTTTTAAGTTGGAGATTACCTAGAGAGGTCTTGAAGCAGGTGTGGGACTTATCTGATCAAGACAATGACAGCATGCTTTCTCTCAGAGAGTTCTGTTTTGCTTTATATCTAATGGAACGTTACAGGGAAGGTCGACCTCTTCCAGCTGTGCTTCCAAATCATGTTATGTTTGATGAGACTCTGTTGTCCATGACAGGACAATCTAACATTGTCCATCCAAATGCAACTTGGGGTCCTCGTCCTGGATTTGGACAGCAGCAACCCCAGGTCACTGCTCGGTCAATGGCACCAACTGCAGGATTGAGGCCCCCAACAAATGTACTTCCTTCGAAGGCCGATGGTGCTAAACCATCCAATGAGCAGAAATCAAGGGCTCCAGTGTTGGAGGATTCATTTCTGGACCAATCTGACAAGAGCCAACAGAATTCAGCTAGTTCAAATGCTCAAGATGCTGCAGCATCAGAGAAAAAGGTTGGAGAGACAGCGAATGTTATTTTGGATTCAAAAGAAAAGATTGAATTCTATCGCACAATGATGCAGGAACTTGTTCTACATAAAAGTAGATGTGATAATAGATTAAATGAGATCACAGAAAGGGCATTTGCTGACAAGCGGGAGGCAGAATCTTTGGGAAAAAAATATGAGGAGAAGTACAAGCAAGTGGCTGAAATAGCATCTAAGTTAACCATCGAAGAAGCAAAATATCGTGATGTTCAAGGAAGGAAGACAGAGTTGCATCAAGCAATTATTAAAATGGAACAAGGAGGAAGTGCTGATGGTATTCTTCAGGTCCGAGCTGATCGAATACAATCTGATATTGAGGAGCTCATAAAGGCTTTAACTGAGCGTTGTAAGAAACATGGATTTGATGTTAAGTCGGCAGCTATAATCGAACTTCCAGTAGGTTGGCAACCTGGAATTTCGGATGATGCAGCTATATGGGATGAAGAGTGGGATAAGTTTGAAGATGAAGGATTTTCCAATGATCTTAATCTCGATCCAAAAGGTGTTTCTGCCTCAAATCCAAAAATGTCAGACAATCAGGGTGAAAAGGATCAAGCAGATTATAACTCAACTCATGATTCATCGTCAAATGCCAATGGCAAAGTGGGGAACTCCGCGAGTACCATCAATCGTGGCCTTGAGAGTGAATCTGTGTATAGCCACAGTGAAGATGAATCAGCAAGAAGTCCATATGGAAGTCCAGCTGCAAAGACGTCTCTAGAAAGCCCTTCTCATGAATTTTCAGATGCTGGTTTTGAAAAAAGTCCGGAAGCATATAGAAGTTTCAATGAGTCAGCTTGGGGCAACTTTGACAATAATGACGATGTGGACTCGGTTTGGGGAGTAAAACCAGTTAATACCAAGGAGCCAGACTCAGAAAAGCACAGAGATTTCTTTGGATCCACTGATTTCGATACGAGCTCTGCTAAATCAGGATCCCCGAATGCAGATAGCTTCTTCCAGAGAAAAAGCCCATTTTTTGAGGATTCTGTCCCTGCCACTCCTCTCTCTAGATTCGGCAACTCTTCCCCTCGTTATAGCGATGTCGGGGATCACTTCTTTGACAATTCCTCCAGGTTTGATTCTTTCAGCATGCAGGATGGCAGTTTTTCTCCTCAACGTGAGAAGTTCAGCAGGTTCGATTCAATAAGCAGTTCTCGAGATTTTGGCAATAATCAAGAGAAGTTTTCAAGGTTTGATTCTATGAGTAGTAGCATGGACTTCGGCCAGAGTAGCAAGAGCCACGCCAGGTTTGACTCCATTGGCAGCTCCAAAGATTTCGGCCAGAGTGCCTTCTCTTTTGATGATGCAGACCCATTTGGGTCCTCTGGTCCGTTTAAAGTCGCATCAGAGAGTCAAAGTCCGAAGAAAAGTTCTGATAGTTGGAGAGCTTTCTAA 4416 45.06 MADDIRRWVTEFLLRSSEVDDLLLKRVLSVIDASDWDFRLKKAALLKAVECEILGNTVTEHLLEIFEIIEQFDKDQGHTIPESLKAAYCAVAVECTMMFFPVRGIGKQVTYSEAVSNIWSGRVTELETAGMSELVSPELKATKKELEATLSDGEGWKKLVKLNTKYQALKRTHDYLIEARASLGQPFLEFAATVEWRETSDGLTTEGQETTQVQTLVGTEVEVLDNPGSSQGVSESVAMEVGLLDNPSPSRGVSGKPLASHRRVRAAKISHPVDLENDVSSEKYTCLHTPEVNRAREALKASTLELQAVVKDPLPDALRIAESVAHDLAQKNKISEHSMEDQNGAGASNPVITKGALPLQSVSSASASEQNNSIDKVSRLHLPSPKRKNFSPLKKYVDTKFVRRRTRRNWSLLEEDTLRTAVQKYGKGNWKLILNAHRDVFEERTDVDLKDKWRNMTRRADLDGDGRISGAEAVAFFQASNLPKNVLAQIWMHADQRKTGFLGRPDFYNALRLVTVAQSKRELTPEIVKAALYGPAAAKIPPPKIDLPAVAAPQSTSVPAASSPQMSIPAPTASQNFGFRGQGVPNVGVNQQYLSAQPNPSMRLPQATPGGVASNTQLVIAASEPSGGGNVLGSNLPNPNDWLSGRSGGAPAAGPRGVSPSMPSPATLLSSALVPSQPMPNDRAPAVTGNGFASKSAFGADMFSVTPSPPRPESSGLNNAANNSFGPSAIVPVPSVSQPLSKHNSMESLQSTFVSRPLSGGQFQLSQSSLEPSKEVRATGPSPLISSGITSGARNSTSENAATWPKMKPTDVQKYTKVFMEVDTDRDGRITGDQARNLFLSWRLPREVLKQVWDLSDQDNDSMLSLREFCFALYLMERYREGRPLPAVLPNHVMFDETLLSMTGQSNIVHPNATWGPRPGFGQQQPQVTARSMAPTAGLRPPTNVLPSKADGAKPSNEQKSRAPVLEDSFLDQSDKSQQNSASSNAQDAAASEKKVGETANVILDSKEKIEFYRTMMQELVLHKSRCDNRLNEITERAFADKREAESLGKKYEEKYKQVAEIASKLTIEEAKYRDVQGRKTELHQAIIKMEQGGSADGILQVRADRIQSDIEELIKALTERCKKHGFDVKSAAIIELPVGWQPGISDDAAIWDEEWDKFEDEGFSNDLNLDPKGVSASNPKMSDNQGEKDQADYNSTHDSSSNANGKVGNSASTINRGLESESVYSHSEDESARSPYGSPAAKTSLESPSHEFSDAGFEKSPEAYRSFNESAWGNFDNNDDVDSVWGVKPVNTKEPDSEKHRDFFGSTDFDTSSAKSGSPNADSFFQRKSPFFEDSVPATPLSRFGNSSPRYSDVGDHFFDNSSRFDSFSMQDGSFSPQREKFSRFDSISSSRDFGNNQEKFSRFDSMSSSMDFGQSSKSHARFDSIGSSKDFGQSAFSFDDADPFGSSGPFKVASESQSPKKSSDSWRAF 1471
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 88019712 88039682 + Hsped.01g23500.1 Hepe01g2350 561460

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2350 1471 Gene3D - 402 452 - -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 663 677 - -
Hepe01g2350 1471 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 404 461 IPR017930 -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 1162 1258 - -
Hepe01g2350 1471 Pfam Cytoskeletal-regulatory complex EF hand 805 876 IPR000261 GO:0005515(InterPro)
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 626 723 - -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 1387 1426 - -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 1450 1471 - -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 708 723 - -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 245 264 - -
Hepe01g2350 1471 ProSiteProfiles EF-hand calcium-binding domain profile. 810 845 IPR002048 GO:0005509(InterPro)
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 783 803 - -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 1171 1185 - -
Hepe01g2350 1471 SUPERFAMILY EF-hand 803 894 IPR011992 -
Hepe01g2350 1471 PANTHER EH DOMAIN 458 1384 - GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0016197(PANTHER)
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 1308 1326 - -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 1452 1471 - -
Hepe01g2350 1471 ProSiteProfiles EF-hand calcium-binding domain profile. 448 483 IPR002048 GO:0005509(InterPro)
Hepe01g2350 1471 CDD EH 815 881 IPR000261 GO:0005515(InterPro)
Hepe01g2350 1471 Gene3D - 453 545 - -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 971 990 - -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 910 997 - -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 626 642 - -
Hepe01g2350 1471 SUPERFAMILY EF-hand 452 528 IPR011992 -
Hepe01g2350 1471 SUPERFAMILY Homeodomain-like 408 460 IPR009057 -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 1230 1251 - -
Hepe01g2350 1471 CDD SANT_TRF 408 458 - -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 910 932 - -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 1196 1222 - -
Hepe01g2350 1471 ProSiteProfiles Myb-like domain profile. 402 457 IPR001005 -
Hepe01g2350 1471 ProSiteProfiles EH domain profile. 811 894 IPR000261 GO:0005515(InterPro)
Hepe01g2350 1471 SMART sant 406 459 IPR001005 -
Hepe01g2350 1471 ProSiteProfiles EH domain profile. 449 539 IPR000261 GO:0005515(InterPro)
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 1287 1327 - -
Hepe01g2350 1471 Pfam Myb-like DNA-binding domain 407 456 IPR001005 -
Hepe01g2350 1471 CDD EH 458 519 IPR000261 GO:0005515(InterPro)
Hepe01g2350 1471 SMART eh_3 444 537 IPR000261 GO:0005515(InterPro)
Hepe01g2350 1471 SMART eh_3 804 899 IPR000261 GO:0005515(InterPro)
Hepe01g2350 1471 Gene3D - 805 894 - -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 1293 1307 - -
Hepe01g2350 1471 MobiDBLite consensus disorder prediction 763 803 - -
Hepe01g2350 1471 SMART efh_1 486 514 IPR002048 GO:0005509(InterPro)
Hepe01g2350 1471 SMART efh_1 452 480 IPR002048 GO:0005509(InterPro)
Hepe01g2350 1471 SMART efh_1 848 876 IPR002048 GO:0005509(InterPro)
Hepe01g2350 1471 SMART efh_1 814 842 IPR002048 GO:0005509(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2350 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2350 Hepe-Chr1:88019712 Hepe07g0407 Hepe-Chr7:4143117 2.51e-07 dispersed
Hepe06g0016 Hepe-Chr6:481910 Hepe01g2350 Hepe-Chr1:88019712 9.15e-13 transposed
Hepe07g1553 Hepe-Chr7:53705520 Hepe01g2350 Hepe-Chr1:88019712 2.73e-12 transposed
Hepe08g0681 Hepe-Chr8:6116629 Hepe01g2350 Hepe-Chr1:88019712 3.45e-122 transposed
Hepe08g2712 Hepe-Chr8:69114484 Hepe01g2350 Hepe-Chr1:88019712 1.61e-65 transposed
Hepe09g1148 Hepe-Chr9:13404297 Hepe01g2350 Hepe-Chr1:88019712 3.44e-120 transposed
Hepe01g2350 Hepe-Chr1:88019712 Hepe02g0365 Hepe-Chr2:3422167 1.52e-217 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g78 . . . . . . . . . . Cma01g02025 Cma09g00044 Car01g01591 . . Cpe06g00014 . . . . . . . . . . . . . . . . . Cone17ag1459 Cone20ag0016 Lsi04g01819 Csa04g02715 . . . . . . . . . . . . Cmo09g00045 . . . Car09g00036 . Cpe02g00029 Bhi09g02853 Tan01g5126 Cmetu07g1818 . Hepe01g2350 Mch11g0047 . Cla11g01832 Cam11g1899 Cec11g1925 Cco11g1934 Clacu11g2063 Cmu11g1868 Cre11g2276 . . Chy07g00404 Cme07g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005327 2 2 2 4 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 0 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54908 PF12763 EF-hand_4 1.50E-10 CL0220 Hepe TF