Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2353 ATGGCTACGGGTATAGATTTTTCACCTACTTTCGCTCTACTGGAAGGCGGCGGATACAATAAGGACAATGTATCAGCCACAAATGATGAAAGTTCTGATAGCTTTAATAGTTTAAAACAGATGACCGGTGGGAAACCTCCTCGACACCTCTCCGTTATGCGGCATAGTGTGAGCTCCATAAAGCTGCTAGGCCAAGCTGATTTAAGCTTGGATGCTGAAGCTCTTGGGAACAAGTCGCCTGATGGGAAAGCAGGATTCTTACCTGTCTTGAGATCGGGTAGCTGTTCAGAAAGGGGACCTAAACAGTACATGGAAGATGAGCACATATGCATAGATGATCTTGTTGAACACATCCATGCATGTGCAGATTTCACTTCTCCTGGAGCTTTCTATGGTGTATTTGATGGCCATGGGGGTACAGACGCAGCGGCTTTTGTTAGAAAGAACATCCTCAGATTCATAGTCGAGGACTCCTGTTTTCCAATTTGTGTCGAGAAGGCAATTAAGAGTGCTTTTATGAAAGCTGATTACGCATTTGCTGATGCCAGTTCTCTGGATATCTCCTCCGGCACAACTGCCCTAACTGCTTTAATTTTTGGAAGAACAATGATTATTGCGAATGCCGGAGATTGTCGAGCAGTTTTGGGGAGGAGGGGCAAGGCTATCGAGGTTTCAAAGGATCACAAGCCCAACTGTGCATCTGAAAAACTAAGAATTGAGAAGCTCGGGGGAGTGATATATGATGGGTACCTGAATGGGCAGTTATCTGTTGCGCGTGCTATAGGAGACTGGCACATGAAAGGCGCCAAGGGTTCTGCTTGCCCACTGAGTTCAGAGCCAGAGCTGCAGGAATTGCATTTGACAGAGGAAGATGAATTCTTAATAATGGGATGCGATGGTCTTTGGGATGTGATGAGCAGTCAGTATGCTGTTACAATGGCAAGGAAAGAGCTGATGCTACATAATGATCCTGAAAGATGTTCAAGAGAGCTGGTAAGGGAAGCATTAAAGCGCAATACATGCGATAATTTAACCGTTATTGTGGTCTGTTTTTCTGCCGATCCGCCCCCTCGGATCGAAATTCCTCAAACTCGAGTAAGGAGAAGCATATCTTTAGAAGGGCTGAATTTGTTGAAAGGAGTACTGGACTGCAATTCATGA 1161 45.22 MATGIDFSPTFALLEGGGYNKDNVSATNDESSDSFNSLKQMTGGKPPRHLSVMRHSVSSIKLLGQADLSLDAEALGNKSPDGKAGFLPVLRSGSCSERGPKQYMEDEHICIDDLVEHIHACADFTSPGAFYGVFDGHGGTDAAAFVRKNILRFIVEDSCFPICVEKAIKSAFMKADYAFADASSLDISSGTTALTALIFGRTMIIANAGDCRAVLGRRGKAIEVSKDHKPNCASEKLRIEKLGGVIYDGYLNGQLSVARAIGDWHMKGAKGSACPLSSEPELQELHLTEEDEFLIMGCDGLWDVMSSQYAVTMARKELMLHNDPERCSRELVREALKRNTCDNLTVIVVCFSADPPPRIEIPQTRVRRSISLEGLNLLKGVLDCNS 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 88046733 88050151 - Hsped.01g23530.1 Hepe01g2353 561463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2353 386 CDD PP2Cc 91 351 IPR001932 -
Hepe01g2353 386 ProSitePatterns PPM-type phosphatase domain signature. 130 138 IPR000222 GO:0043169(InterPro)
Hepe01g2353 386 MobiDBLite consensus disorder prediction 24 47 - -
Hepe01g2353 386 SUPERFAMILY PP2C-like 85 352 IPR036457 -
Hepe01g2353 386 Gene3D - 77 354 IPR036457 -
Hepe01g2353 386 PANTHER PROTEIN PHOSPHATASE 2C 68 351 IPR015655 GO:0004722(InterPro)|GO:0006470(PANTHER)|GO:0006470(InterPro)
Hepe01g2353 386 SMART PP2C_4 81 349 IPR001932 -
Hepe01g2353 386 MobiDBLite consensus disorder prediction 24 41 - -
Hepe01g2353 386 FunFam Probable protein phosphatase 2C 22 76 354 - -
Hepe01g2353 386 Pfam Protein phosphatase 2C 92 343 IPR001932 -
Hepe01g2353 386 ProSiteProfiles PPM-type phosphatase domain profile. 91 351 IPR001932 -
Hepe01g2353 386 SMART PP2C_SIG_2 106 351 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1955 Hepe-Chr1:84375311 Hepe01g2353 Hepe-Chr1:88046733 1.70e-38 dispersed
Hepe01g2353 Hepe-Chr1:88046733 Hepe03g1809 Hepe-Chr3:75003845 3.02e-106 dispersed
Hepe01g2353 Hepe-Chr1:88046733 Hepe08g2470 Hepe-Chr8:65762522 1.68e-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54909 PF00481 PP2C 1.50E-72 CL0238 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2353 K14803 - csv:101205355 744.962