Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2354 ATGAGTTTCATTTGGCTTCTTTTGTTGTTATCTCTGTATTGTGGTATTTTCCCTCTTGGGTTTGGTAAGAACATTTCGTCAAGACCATCGGTTGTGAATGTTGGAGCTATTTTCTCTTTTGATTCTACCATTGGAAAAGTTGCCAAGATTGCCATTGAAGAAGCTGTGAAAGATGTCAATGCGGATCCCAGCATTCTTCCCGGAACCAATCTTTGGTTACAAATTCAAAATTCCAACTGTAGTGGGTTTCTGGGCATGGTCGAAGTTTTGCAACTTATGGAGAATGAAACCGTTGCCATCATAGGCCCCCAATCTTCTGCGGTTGCCCACATTTCATCCCAAGTTGCAACTGAGTTTCAAGTTCCTATGGTCTCATTTGCGGCTACAGATCCTACTCTCTCTGCCCTTCAGTTTCCCTTCTTTGTGAGGGCTGCTCAGAGTGATTTGTTTCAAATGACTGCAGTTGCTGAGATTGTTGATTATTATGGTTGGAAAGAGGTTATTGCTATATATGTCGATGACGATTATGGGTGGAATGGTATTGCAACATTGGATGATAAACTTGCCGAAAGGCGTTGTAAAATCACATTTAAGGTGGGTATTAGTCCAGAATCTGCGGTGAATCGAGTCCAAGTTATGGATCAACTTGTTAAGGTTGCACTAATGGAATCAAGAGTTATGGTTCTCCATGTGAACCCCAAATTAGGCGCTTTAGTCTTTTCAGTGGCTAGATACCTTCAAATGATGGGCAATGGATATGTATGGATAACTACCGATTGGCTTTCATCTCTGTTAGATAGTGTTGTTCCTCCCCCTCTCGAGACCATGGAGTCGATGCAAGGAGTTCTTTCTTTACGCCAGCACACAGCAGATTCAGATAAAAAGAAAGCTTTTCTTTCCAGGTGGAATAAGTTAACTGGTGGCTCTTTAGGTCTTAATGCTTATGGTCTATATGCTTATGACTCTATTTGGGTGGTTGCTCGTGCCATCGACAATTTTTTTAATCAAGGTGGGGTCGTTACACATTCTAATAATTCGAGGCTGCATTTTAGTGACAGTGGTAATCTTCATCTTGAAGCTATGACTATCTTTGATGGTGGAAATCGTCTGCTGAATAACATATTGGAGAGCGACTTTGTTGGTTTGACTGGTGCCATTAAGTTTGATTCTGATAGATCCCTTGTACATCCTGCCTATGATATTATTAATGTTATTGGGACTGGATCAAGAAGGATCGGTTACTGGTCCAACTATTCTGGTCTATCAATTGATGCTCCTGAGACACTCTATTCCAAACCACCTAATCGTTCACATGCAAATCAGAAGCTGTACGAGGTTATATGGCCAGGAAATACAATAGAAAAGCCTCGAGGATGGGTATTCCCAAACAATGGGAAGCTACTAAACATTGGAGTTCCACTTCGGGTCAGTTACAAGGAGTTTGTATCACGAATCAAAGGGACCGAAAATTTCCAAGGTTTCTGCATTGACGTGTTTACAGCTGCTGTAAACTTATTACCCTATGCTGTCCCGCACCGATTTATAGCTGTTGGCAATGGCCATCAAAATCCAAATTACACAGATCTTGTGTATGGGATTACAACTGGCAAATTTGATGCTGTTATAGGAGACATAGCCATTGTCACAAGCCGTACAAGGGTTGTGGATTTCACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCATTCAAAAAACTGAACACTGGTGCCTGGGCTTTCATGCATCCATTTTCTCCAGCCATGTGGATGGTCACTGCTAGTTTCTTCCTTTTTATTGGAATAGTTGTCTGGATTCTGGAGCATAGGACAAACGATGAATTCAGAGGCCCACCTAGAACACAATGTATTACAATTTTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCATAAGGAGAACACAATTAGCACTCTTGGCCGCCTAGTGCTGATCATATGGCTCTTTGTGGTTTTGATAGTAAATTCTAGCTATACTGCCAGTTTAACATCCATTCTCACAGTGCAGCAGCTATATTCTCCAATCACAGGAATCGAATCCTTGAGGGAGGGTGATGAGCCAATAGGTTTCCAAGTTGGATCTTTTGCTGAACGTTATCTGAGTGAGGAGCTCAACATATCTAAATCTAGGCTTATTGCTCTTGGATCACCCGAAGAATATACTAAGGCACTTGAGCTTGGCCCTGACAAGGGAGGTGTTGCTGCTATAGTTGATGAACTTCCTTATGTAGAAAGTTTCCTCTCGAGACAATGTACATTCAGAGTTGTTGGTCAAGAGTTTACGAAAAGTGGCTGGGGTTTCGCATTCCAGCGAGACTCTCCCTTGGCTATAGATTTGTCGACTGCCATTTTGCAGCTCTCAGAGAATGGCGATCTGCAACGGATTCATGACAAATGGCTAGTGAAAAGCGCCTGCAGCATGGACAGTGCAGAGCTAGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGCCTCTTTCTAGTCTGTGGGATAGTTTGTTTCATTGCCCTTGCCATATACGGCTTTCAGATTATCCGTCAGTTCTACCGTTCTGATTCAAAAGAATCTGATCTGTCTAGCAGTACTGGATCACATTCTACCCGTCTTCGACGAATTATATCATTGTTGGATGAGAAGAAAGAACCTTCTAAAAGGGAAAGCAAACGAAGGAAAGTCGAGAAATCATCTGAAAATGACAAGGGCGATGATCATTCCGAGGTAAATCCTTGA 2754 42.27 MSFIWLLLLLSLYCGIFPLGFGKNISSRPSVVNVGAIFSFDSTIGKVAKIAIEEAVKDVNADPSILPGTNLWLQIQNSNCSGFLGMVEVLQLMENETVAIIGPQSSAVAHISSQVATEFQVPMVSFAATDPTLSALQFPFFVRAAQSDLFQMTAVAEIVDYYGWKEVIAIYVDDDYGWNGIATLDDKLAERRCKITFKVGISPESAVNRVQVMDQLVKVALMESRVMVLHVNPKLGALVFSVARYLQMMGNGYVWITTDWLSSLLDSVVPPPLETMESMQGVLSLRQHTADSDKKKAFLSRWNKLTGGSLGLNAYGLYAYDSIWVVARAIDNFFNQGGVVTHSNNSRLHFSDSGNLHLEAMTIFDGGNRLLNNILESDFVGLTGAIKFDSDRSLVHPAYDIINVIGTGSRRIGYWSNYSGLSIDAPETLYSKPPNRSHANQKLYEVIWPGNTIEKPRGWVFPNNGKLLNIGVPLRVSYKEFVSRIKGTENFQGFCIDVFTAAVNLLPYAVPHRFIAVGNGHQNPNYTDLVYGITTGKFDAVIGDIAIVTSRTRVVDFTLPYTASGLVVVAPFKKLNTGAWAFMHPFSPAMWMVTASFFLFIGIVVWILEHRTNDEFRGPPRTQCITILWFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPITGIESLREGDEPIGFQVGSFAERYLSEELNISKSRLIALGSPEEYTKALELGPDKGGVAAIVDELPYVESFLSRQCTFRVVGQEFTKSGWGFAFQRDSPLAIDLSTAILQLSENGDLQRIHDKWLVKSACSMDSAELESDRLQLKSFWGLFLVCGIVCFIALAIYGFQIIRQFYRSDSKESDLSSSTGSHSTRLRRIISLLDEKKEPSKRESKRRKVEKSSENDKGDDHSEVNP 917
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 88051313 88056218 + Hsped.01g23540.1 Hepe01g2354 561464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2354 917 PIRSF IGluLR_plant 1 916 IPR017103 -
Hepe01g2354 917 Gene3D - 774 807 - -
Hepe01g2354 917 MobiDBLite consensus disorder prediction 879 917 - -
Hepe01g2354 917 FunFam Glutamate receptor 463 579 - -
Hepe01g2354 917 FunFam Glutamate receptor 147 301 - -
Hepe01g2354 917 CDD GluR_Plant 466 808 - -
Hepe01g2354 917 Gene3D - 578 708 - -
Hepe01g2354 917 MobiDBLite consensus disorder prediction 862 877 - -
Hepe01g2354 917 Gene3D - 738 773 - -
Hepe01g2354 917 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Hepe01g2354 917 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Hepe01g2354 917 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 319 331 - -
Hepe01g2354 917 Gene3D - 50 396 - -
Hepe01g2354 917 Pfam Ligand-gated ion channel 809 840 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe01g2354 917 FunFam Glutamate receptor 705 812 - -
Hepe01g2354 917 SUPERFAMILY Periplasmic binding protein-like I 27 460 IPR028082 -
Hepe01g2354 917 SUPERFAMILY Periplasmic binding protein-like II 446 810 - -
Hepe01g2354 917 Gene3D - 461 577 - -
Hepe01g2354 917 FunFam Glutamate receptor 579 709 - -
Hepe01g2354 917 Pfam Bacterial extracellular solute-binding proteins, family 3 478 588 IPR001638 -
Hepe01g2354 917 Pfam Receptor family ligand binding region 49 406 IPR001828 -
Hepe01g2354 917 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 891 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Hepe01g2354 917 Gene3D - 147 421 - -
Hepe01g2354 917 SMART GluR_14 469 810 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe01g2354 917 MobiDBLite consensus disorder prediction 862 917 - -
Hepe01g2354 917 CDD PBP1_GABAb_receptor_plant 33 422 IPR044440 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2354 Hepe-Chr1:88051313 Hepe08g0470 Hepe-Chr8:4123596 0.0 dispersed
Hepe02g1472 Hepe-Chr2:19085523 Hepe01g2354 Hepe-Chr1:88051313 3.98e-142 transposed
Hepe04g1674 Hepe-Chr4:71943103 Hepe01g2354 Hepe-Chr1:88051313 0.0 transposed
Hepe08g1459 Hepe-Chr8:17686919 Hepe01g2354 Hepe-Chr1:88051313 1.50e-157 transposed
Hepe09g0515 Hepe-Chr9:4827481 Hepe01g2354 Hepe-Chr1:88051313 3.55e-143 transposed
Hepe01g2354 Hepe-Chr1:88051313 Hepe02g0361 Hepe-Chr2:3381094 0.0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2354 K05387 - csv:101204862 1607.42