Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe01g2358 | ATGCGTCCCTTCAGGTATCTCGCCGGTGTGAATTCCTCCGCGATCTCCGGCTCAACGGAGCCAGAGAGGTATGACTCCGACTTCGTCATAATCCTCGCCGCCCTCCTCTGCGCCTTGATATGCGTTCTCGGTCTCGTTGCTGTTGCCCGCTGCGCCTGGCTACGCCACCTCGCCGGCGGCAGCGCTTCCAATCGTCCTCCTCCACCTCCTTCCTCGAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACCGCCGAGTTTGCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATCCGGGTGCTTCCGCAGTGTGGCCATGGATTTCACGTGTCCTGCATCGATACGTGGTTCCGATCTCACTCCTCGTGTCCTTCGTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCGGCGGCGAGCTCGAGTTCGAACGGTGGAACCGAATCCAGAGTAAAAGAGGAAGGAGAAGATAATAAGACGAATAGGTTCTTACCTTAA | 558 | 56.45 | MRPFRYLAGVNSSAISGSTEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGGSASNRPPPPPSSNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFAVGDEIRVLPQCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPAASSSSNGGTESRVKEEGEDNKTNRFLP | 185 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 88069437 | 88069994 | + | Hsped.01g23580.1 | Hepe01g2358 | 561468 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe01g2358 | 185 | Pfam | Ring finger domain | 99 | 142 | IPR001841 | - | |
Hepe01g2358 | 185 | CDD | RING-H2_EL5-like | 99 | 142 | - | - | |
Hepe01g2358 | 185 | SMART | ring_2 | 100 | 141 | IPR001841 | - | |
Hepe01g2358 | 185 | PANTHER | RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED | 20 | 167 | IPR052788 | - | |
Hepe01g2358 | 185 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 68 | 146 | IPR013083 | - | |
Hepe01g2358 | 185 | ProSiteProfiles | Zinc finger RING-type profile. | 100 | 142 | IPR001841 | - | |
Hepe01g2358 | 185 | MobiDBLite | consensus disorder prediction | 156 | 185 | - | - | |
Hepe01g2358 | 185 | SUPERFAMILY | RING/U-box | 80 | 148 | - | - | |
Hepe01g2358 | 185 | MobiDBLite | consensus disorder prediction | 169 | 185 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe01g2358 | Hepe-Chr1:88069437 | Hepe06g0855 | Hepe-Chr6:55468659 | 1.07e-59 | dispersed | |
Hepe01g2358 | Hepe-Chr1:88069437 | Hepe03g1381 | Hepe-Chr3:70451501 | 2.77e-20 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe01g2358 | - | - | - | 0.0 |