Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2358 ATGCGTCCCTTCAGGTATCTCGCCGGTGTGAATTCCTCCGCGATCTCCGGCTCAACGGAGCCAGAGAGGTATGACTCCGACTTCGTCATAATCCTCGCCGCCCTCCTCTGCGCCTTGATATGCGTTCTCGGTCTCGTTGCTGTTGCCCGCTGCGCCTGGCTACGCCACCTCGCCGGCGGCAGCGCTTCCAATCGTCCTCCTCCACCTCCTTCCTCGAACAAAGGTCTCAAGAAGAAGATCCTGAGGTCTCTTCCGAAGTACACCTTCACCGCCGAGTTTGCTGCTCAGTTCTCAGATTGCGCGATCTGCCTCGCGGAGTTCGCTGTCGGTGATGAAATCCGGGTGCTTCCGCAGTGTGGCCATGGATTTCACGTGTCCTGCATCGATACGTGGTTCCGATCTCACTCCTCGTGTCCTTCGTGCCGTCAGATTCTGGTGGTAAGTCAGTGCCAGAAGTGCGGCGGTTTTCCGGCGGCGAGCTCGAGTTCGAACGGTGGAACCGAATCCAGAGTAAAAGAGGAAGGAGAAGATAATAAGACGAATAGGTTCTTACCTTAA 558 56.45 MRPFRYLAGVNSSAISGSTEPERYDSDFVIILAALLCALICVLGLVAVARCAWLRHLAGGSASNRPPPPPSSNKGLKKKILRSLPKYTFTAEFAAQFSDCAICLAEFAVGDEIRVLPQCGHGFHVSCIDTWFRSHSSCPSCRQILVVSQCQKCGGFPAASSSSNGGTESRVKEEGEDNKTNRFLP 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 88069437 88069994 + Hsped.01g23580.1 Hepe01g2358 561468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2358 185 Pfam Ring finger domain 99 142 IPR001841 -
Hepe01g2358 185 CDD RING-H2_EL5-like 99 142 - -
Hepe01g2358 185 SMART ring_2 100 141 IPR001841 -
Hepe01g2358 185 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 20 167 IPR052788 -
Hepe01g2358 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 146 IPR013083 -
Hepe01g2358 185 ProSiteProfiles Zinc finger RING-type profile. 100 142 IPR001841 -
Hepe01g2358 185 MobiDBLite consensus disorder prediction 156 185 - -
Hepe01g2358 185 SUPERFAMILY RING/U-box 80 148 - -
Hepe01g2358 185 MobiDBLite consensus disorder prediction 169 185 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2358 Hepe-Chr1:88069437 Hepe06g0855 Hepe-Chr6:55468659 1.07e-59 dispersed
Hepe01g2358 Hepe-Chr1:88069437 Hepe03g1381 Hepe-Chr3:70451501 2.77e-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2358 - - - 0.0