Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2368 ATGTCGGGATCTGAGACCGGATTGATGAGCAGCGGCGAACCCTTCAACATCGGTCACCAGAAGAGTCCAGTACACTCACAACAGCCTGTCTTGCAGAGCATGCATTTACCTTTCGCCGCCGACGGCGTCTACAAGCCCACCTACCAGTCCTCCGCTGCCGATGGATCTGCTCGTGAAGCTTTCGTTAACATGAATACACAAAGCGAGCCTGTAAAGAGGAAGAGAGGGAGGCCAAGGAAGTATGGGCCAGATGGCAGTATGGCAGTGGCTCCTGCACTCCCCTCCGCCTCCGCCTCCGCCTCCGCCTCCGCAACTCAGTCAGGTGGTGGTTTTTCTCCTCCTCCGTCGGGAGGACCAGCCTCTCCAACGTCTTTGAAGAAAGCCAGAGGAAGACCCCCTGGCTCTAGCAAAAAGCAGCAGTTGGATGCTTTGGGGTCAGCAGGAGTTGGATTTACCCCACATGTCATCACCGTGAAAGCTGGAGAGGATGTATCTTCGAAAATAATGTCATTTTCACAGAATGGTTCTAGAGCTGTTTGTGTCCTTACTGCAAATGGAGCAATATCCAATGTGACTCTACGTCAACCAGCCATGTCTGGTGGAACCGTCACTTACGAGGGGCGATTCGAGATTTTGTCACTATCTGGGTCATATCTCCTCTCCGAGAATGGCGGTCAGCGGAGCCGAAGTGGGGGTCTGAGTGTTTCATTGTCTGGACCAGATGGTAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCGGCTCCTGTTCAGGTGGTGGTGGGGAGCTTCGTGACCGATGGGGGGCACAAGGAATTGAAACAAGCAAACCAAATAGAACAGCCGCTTGTTAGTGCGCCACATAAACTTGCTCCGATCCGTGCTGGAATGACCGGGGCCAGCAGCCCGCCATCTCGTGGGACGCTCAGTGAATCCTCTGGTGGAGGGCCTGGAAGTCCGTTTAATCTGAGTGCTGGAGCCTGCAATAACAACCCCATATCTTGGAAGTAA 1017 53.98 MSGSETGLMSSGEPFNIGHQKSPVHSQQPVLQSMHLPFAADGVYKPTYQSSAADGSAREAFVNMNTQSEPVKRKRGRPRKYGPDGSMAVAPALPSASASASASATQSGGGFSPPPSGGPASPTSLKKARGRPPGSSKKQQLDALGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGSRAVCVLTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRSRSGGLSVSLSGPDGRVLGGGVAGLLTAAAPVQVVVGSFVTDGGHKELKQANQIEQPLVSAPHKLAPIRAGMTGASSPPSRGTLSESSGGGPGSPFNLSAGACNNNPISWK 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 88111624 88113520 - Hsped.01g23680.1 Hepe01g2368 561478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2368 338 MobiDBLite consensus disorder prediction 303 338 - -
Hepe01g2368 338 Gene3D - 153 283 - -
Hepe01g2368 338 MobiDBLite consensus disorder prediction 48 141 - -
Hepe01g2368 338 CDD DUF296 152 266 IPR005175 -
Hepe01g2368 338 MobiDBLite consensus disorder prediction 49 69 - -
Hepe01g2368 338 ProSiteProfiles PPC domain profile profile. 147 289 IPR005175 -
Hepe01g2368 338 Pfam Plants and Prokaryotes Conserved (PCC) domain 153 267 IPR005175 -
Hepe01g2368 338 SUPERFAMILY AF0104/ALDC/Ptd012-like 151 277 - -
Hepe01g2368 338 MobiDBLite consensus disorder prediction 96 112 - -
Hepe01g2368 338 MobiDBLite consensus disorder prediction 1 28 - -
Hepe01g2368 338 FunFam AT-hook motif nuclear-localized protein 1-like 153 284 - -
Hepe01g2368 338 MobiDBLite consensus disorder prediction 296 338 - -
Hepe01g2368 338 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 33 318 IPR039605 GO:0003680(InterPro)
Hepe01g2368 338 SMART AT_hook_2 126 138 IPR017956 GO:0003677(InterPro)
Hepe01g2368 338 SMART AT_hook_2 72 84 IPR017956 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2368 Hepe-Chr1:88111624 Hepe03g0547 Hepe-Chr3:10658728 5.16e-72 dispersed
Hepe01g2368 Hepe-Chr1:88111624 Hepe08g1523 Hepe-Chr8:19506738 4.91e-125 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2368 - - - 0.0