Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2369 ATGGAGAAGGTTCCGACCACCAGTGTTTCTGCCATGGATGCGTTCGAGAAGCTGGAGAAGGTCGGAGAAGGAACTTATGGCAAAGTTTACAGGGCAAGGGAGAAAGCCACCGGCAAGATTGTAGCCCTCAAGAAGACGCGCCTCCATGAGGATGAAGAAGGCGTTCCTCCCACCACTCTCAGAGAGGTTTCAATTCTTCGGATGCTTTCTCGAGATCCTCATATTGTTAGGTTGATGGATGTCAAACAAGGCCAGAACAAGGAAGGGAAAACCGTTCTTTACTTGGTGTTTGAATACATGGACACTGATCTGAAAAAATACATCAAGAGTTTCCGTCACACCGGAGAAGGCATTCCTGTCAACGCTGTCAAGAGTTTGATGTACCAACTCTGCAAGGGCGTTGCCTTCTGCCATGGTCATGGAATCTTGCACAGAGACCTGAAACCACACAATCTCTTGATGGACCGTAAGACTATGATGCTCAAAATTGCAGACCTTGGGCTGGCTCGAGCATTTACTGTGCCAATTAAGAAGTATACTCATGAGATACTGACCCTTTGGTATAGAGCTCCCGAAGTTCTGTTGGGAGCTACTCATTACTCCACAGCTGTAGATATGTGGTCTGTTGGCTGCATATTCGCCGAGCTTGCAACCAAGCAGGCGTTATTTCCTGGAGATTCTGAGTTGCAGCAGCTCCTTCATATCTTCAGGCTATTAGGGACCCCAAATGAAAAAATTTGGCCTGGTGTGAGTAAACTAATGAACTGGCATGAGTATCCCCAGTGGAACCCTCAAACCCTTTCAACTGCAGTCCCCAACTTGGATGATAAAGGGCTAGATCTGCTTTCACAAATGTTGAAGTATGAGCCCTCAATGCGAATTTCAGCAAAGAAGGCAATGGAACATCCTTATTTTGATGACTTGAACAAGGAATATCTCTGA 942 46.28 MEKVPTTSVSAMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKYIKSFRHTGEGIPVNAVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELATKQALFPGDSELQQLLHIFRLLGTPNEKIWPGVSKLMNWHEYPQWNPQTLSTAVPNLDDKGLDLLSQMLKYEPSMRISAKKAMEHPYFDDLNKEYL 313
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 88119000 88121033 + Hsped.01g23690.1 Hepe01g2369 561479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2369 313 SMART serkin_6 15 305 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g2369 313 Gene3D Transferase(Phosphotransferase) domain 1 102 312 - -
Hepe01g2369 313 FunFam Cyclin-dependent kinase B2,2 11 101 - -
Hepe01g2369 313 Gene3D Phosphorylase Kinase; domain 1 10 101 - -
Hepe01g2369 313 Pfam Protein kinase domain 15 305 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g2369 313 SUPERFAMILY Protein kinase-like (PK-like) 9 309 IPR011009 -
Hepe01g2369 313 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524(InterPro)
Hepe01g2369 313 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g2369 313 PANTHER CELL DIVISION PROTEIN KINASE 15 305 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Hepe01g2369 313 ProSiteProfiles Protein kinase domain profile. 15 305 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g2369 313 FunFam Cyclin-dependent kinase 2 103 312 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1084 Hepe-Chr1:75683739 Hepe01g2369 Hepe-Chr1:88119000 3.15e-116 dispersed
Hepe01g2369 Hepe-Chr1:88119000 Hepe10g1534 Hepe-Chr10:52091184 1.07e-84 dispersed
Hepe04g1675 Hepe-Chr4:71946882 Hepe01g2369 Hepe-Chr1:88119000 1.70e-12 dispersed
Hepe01g2369 Hepe-Chr1:88119000 Hepe04g0650 Hepe-Chr4:59790818 5.01e-154 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72506 PF00069 Pkinase 2.00E-71 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2369 K07760 - csv:101208001 615.92