Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2371 ATGGGTGATAGCGATAAGGCAGCGCAGGATTTGACTCACAACCAAGTTCAAGTTCAGGAACCAGGATCTACACCGCCTAAGGAGGATCGTAACCTCAAAGAAGATGGGGAATCAGCCTGCCCAACGTTTAACGATGTCAAATTTCACCAACTTCCTTGTCTTCAAAAACCGATCGACGACGATCAGGATATGCTTGATCAGCCTGACGTTGAGACTGCTGCCGATGCAAAAGTTCTCGAGGTTGCTCCTGATGAACCTCCTGAAAGTAAAGAAAATGCCATGGAGACTGATCCCCAAATTGGGAACGAGGATAATCCTTCTGCACCACCCATTTCATCTGAGATCTCCCTGCCTTCAAATGCTGAAAATAACAGTGGGATACCCGTGAAGAATGCATGGACTGATATCGAAATGGCTGAAGCAGACGAACCAGGGACGCCAGAGGACAGGTTGACATTTATGAAGGAGATAGAGAATTTCCACAGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAACCACTAAATTGTTTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGATGTGGTGACTGCATCTAAGTTATGGCGACAAGTAGGAGAGTCTTTCCATCCCCCAAAAACATGCACAACAGTCTCTTGGACGTTTCGCATTTTTTATGAGAAGGCACTTTTAGAATATGAAAAGCATAAAAAGCTAACTGGCGAACTGCAACTCCCTGTCGGATCCCTTCCTCAGTCTACAACTACTGAAAAGGCCGAGACTGGCTATTATCAAGCTCCTGGCTCAGGAAGGGCCCGAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTTGTTGGATATGGTGAGGTTTCTGAGCCTATAATAAAGGACAAGAACTTGGGCTCTACATCAAAGCGTGATAAGAATCTCAAGAACATTGGTTTGCTAAAACACAAGATGCCAACTAATACAGAGCATGCTGGAAGAGATGCAGATTTTGAATCAGATAAGCAAGTGATGACAACAGTTTTGGATGTTGGACCTCCAGCTGATTGGGTCAAAATTAACGTGCGCGAGATGAATGATTGCTTTGAAGTATATGCATTAGTCCCAGGGCTTTTACGAGAGGAGGTTCGGGTTCAATCCGATCCAGCTGGACGCCTGGTAATTACTGGTCAACCTGAGCAGGTGGATAATCCTTGGGGCATCACACCTTTCAAAAAGGTGGTGAGCTTACCTGGGAGAATTGATCCTCTTCAGACATCTGCCGTGGTCAGCCTGCATGGTCGACTTTTTGTGCGAGTCCCTTTCGAGCAAGGATCCAGTCGGACTCGGACATGTAGAGTCTATTATTTCAAAGCCCAGCCCAGTTTCATATAG 1395 46.38 MGDSDKAAQDLTHNQVQVQEPGSTPPKEDRNLKEDGESACPTFNDVKFHQLPCLQKPIDDDQDMLDQPDVETAADAKVLEVAPDEPPESKENAMETDPQIGNEDNPSAPPISSEISLPSNAENNSGIPVKNAWTDIEMAEADEPGTPEDRLTFMKEIENFHRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKKLTGELQLPVGSLPQSTTTEKAETGYYQAPGSGRARRDAAARAMQGWHAQRLVGYGEVSEPIIKDKNLGSTSKRDKNLKNIGLLKHKMPTNTEHAGRDADFESDKQVMTTVLDVGPPADWVKINVREMNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPGRIDPLQTSAVVSLHGRLFVRVPFEQGSSRTRTCRVYYFKAQPSFI 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 88140496 88145203 + Hsped.01g23710.1 Hepe01g2371 561481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2371 464 Gene3D - 148 245 IPR036431 GO:0003677(InterPro)
Hepe01g2371 464 CDD ACD_sHsps_p23-like 362 441 - -
Hepe01g2371 464 FunFam AT-rich interactive domain-containing protein 3 147 246 - -
Hepe01g2371 464 Pfam Hsp20/alpha crystallin family 363 446 IPR002068 -
Hepe01g2371 464 SUPERFAMILY ARID-like 145 240 IPR036431 GO:0003677(InterPro)
Hepe01g2371 464 SMART bright_3 148 239 IPR001606 GO:0003677(InterPro)
Hepe01g2371 464 Pfam ARID/BRIGHT DNA binding domain 150 234 IPR001606 GO:0003677(InterPro)
Hepe01g2371 464 ProSiteProfiles ARID domain profile. 147 238 IPR001606 GO:0003677(InterPro)
Hepe01g2371 464 Gene3D - 338 456 IPR008978 -
Hepe01g2371 464 FunFam AT-rich interactive domain-containing protein 3 338 446 - -
Hepe01g2371 464 MobiDBLite consensus disorder prediction 1 123 - -
Hepe01g2371 464 MobiDBLite consensus disorder prediction 250 269 - -
Hepe01g2371 464 SUPERFAMILY HSP20-like chaperones 355 446 IPR008978 -
Hepe01g2371 464 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 346 457 IPR002068 -
Hepe01g2371 464 SMART ARID_2 144 234 - -
Hepe01g2371 464 MobiDBLite consensus disorder prediction 95 123 - -
Hepe01g2371 464 MobiDBLite consensus disorder prediction 8 24 - -
Hepe01g2371 464 CDD ARID 149 234 - -
Hepe01g2371 464 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 15 444 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2371 Hepe-Chr1:88140496 Hepe06g0848 Hepe-Chr6:55404567 1.64e-148 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54911 PF00011 HSP20 6.40E-05 CL0190 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2371 - - - 0.0