Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2371 ATGGGTGATAGCGATAAGGCAGCGCAGGATTTGACTCACAACCAAGTTCAAGTTCAGGAACCAGGATCTACACCGCCTAAGGAGGATCGTAACCTCAAAGAAGATGGGGAATCAGCCTGCCCAACGTTTAACGATGTCAAATTTCACCAACTTCCTTGTCTTCAAAAACCGATCGACGACGATCAGGATATGCTTGATCAGCCTGACGTTGAGACTGCTGCCGATGCAAAAGTTCTCGAGGTTGCTCCTGATGAACCTCCTGAAAGTAAAGAAAATGCCATGGAGACTGATCCCCAAATTGGGAACGAGGATAATCCTTCTGCACCACCCATTTCATCTGAGATCTCCCTGCCTTCAAATGCTGAAAATAACAGTGGGATACCCGTGAAGAATGCATGGACTGATATCGAAATGGCTGAAGCAGACGAACCAGGGACGCCAGAGGACAGGTTGACATTTATGAAGGAGATAGAGAATTTCCACAGGGAGAGGGCTTTGGAGTTTAAGCCTCCTAAGTTTTATGGGGAACCACTAAATTGTTTGAAGTTATGGAGAGCTGTTATTAGATTGGGAGGCTATGATGTGGTGACTGCATCTAAGTTATGGCGACAAGTAGGAGAGTCTTTCCATCCCCCAAAAACATGCACAACAGTCTCTTGGACGTTTCGCATTTTTTATGAGAAGGCACTTTTAGAATATGAAAAGCATAAAAAGCTAACTGGCGAACTGCAACTCCCTGTCGGATCCCTTCCTCAGTCTACAACTACTGAAAAGGCCGAGACTGGCTATTATCAAGCTCCTGGCTCAGGAAGGGCCCGAAGGGATGCTGCAGCTCGTGCCATGCAGGGTTGGCATGCACAGCGTCTTGTTGGATATGGTGAGGTTTCTGAGCCTATAATAAAGGACAAGAACTTGGGCTCTACATCAAAGCGTGATAAGAATCTCAAGAACATTGGTTTGCTAAAACACAAGATGCCAACTAATACAGAGCATGCTGGAAGAGATGCAGATTTTGAATCAGATAAGCAAGTGATGACAACAGTTTTGGATGTTGGACCTCCAGCTGATTGGGTCAAAATTAACGTGCGCGAGATGAATGATTGCTTTGAAGTATATGCATTAGTCCCAGGGCTTTTACGAGAGGAGGTTCGGGTTCAATCCGATCCAGCTGGACGCCTGGTAATTACTGGTCAACCTGAGCAGGTGGATAATCCTTGGGGCATCACACCTTTCAAAAAGGTGGTGAGCTTACCTGGGAGAATTGATCCTCTTCAGACATCTGCCGTGGTCAGCCTGCATGGTCGACTTTTTGTGCGAGTCCCTTTCGAGCAAGGATCCAGTCGGACTCGGACATGTAGAGTCTATTATTTCAAAGCCCAGCCCAGTTTCATATAG 1395 46.38 MGDSDKAAQDLTHNQVQVQEPGSTPPKEDRNLKEDGESACPTFNDVKFHQLPCLQKPIDDDQDMLDQPDVETAADAKVLEVAPDEPPESKENAMETDPQIGNEDNPSAPPISSEISLPSNAENNSGIPVKNAWTDIEMAEADEPGTPEDRLTFMKEIENFHRERALEFKPPKFYGEPLNCLKLWRAVIRLGGYDVVTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKKLTGELQLPVGSLPQSTTTEKAETGYYQAPGSGRARRDAAARAMQGWHAQRLVGYGEVSEPIIKDKNLGSTSKRDKNLKNIGLLKHKMPTNTEHAGRDADFESDKQVMTTVLDVGPPADWVKINVREMNDCFEVYALVPGLLREEVRVQSDPAGRLVITGQPEQVDNPWGITPFKKVVSLPGRIDPLQTSAVVSLHGRLFVRVPFEQGSSRTRTCRVYYFKAQPSFI 464
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 88140496 88145203 + Hsped.01g23710.1 Hepe01g2371 561481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2371 464 Gene3D - 148 245 IPR036431 GO:0003677(InterPro)
Hepe01g2371 464 CDD ACD_sHsps_p23-like 362 441 - -
Hepe01g2371 464 FunFam AT-rich interactive domain-containing protein 3 147 246 - -
Hepe01g2371 464 Pfam Hsp20/alpha crystallin family 363 446 IPR002068 -
Hepe01g2371 464 SUPERFAMILY ARID-like 145 240 IPR036431 GO:0003677(InterPro)
Hepe01g2371 464 SMART bright_3 148 239 IPR001606 GO:0003677(InterPro)
Hepe01g2371 464 Pfam ARID/BRIGHT DNA binding domain 150 234 IPR001606 GO:0003677(InterPro)
Hepe01g2371 464 ProSiteProfiles ARID domain profile. 147 238 IPR001606 GO:0003677(InterPro)
Hepe01g2371 464 Gene3D - 338 456 IPR008978 -
Hepe01g2371 464 FunFam AT-rich interactive domain-containing protein 3 338 446 - -
Hepe01g2371 464 MobiDBLite consensus disorder prediction 1 123 - -
Hepe01g2371 464 MobiDBLite consensus disorder prediction 250 269 - -
Hepe01g2371 464 SUPERFAMILY HSP20-like chaperones 355 446 IPR008978 -
Hepe01g2371 464 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 346 457 IPR002068 -
Hepe01g2371 464 SMART ARID_2 144 234 - -
Hepe01g2371 464 MobiDBLite consensus disorder prediction 95 123 - -
Hepe01g2371 464 MobiDBLite consensus disorder prediction 8 24 - -
Hepe01g2371 464 CDD ARID 149 234 - -
Hepe01g2371 464 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 15 444 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2371 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2371 Hepe-Chr1:88140496 Hepe06g0848 Hepe-Chr6:55404567 1.64e-148 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe03g0356 . 100 440 ARID Transcription Factor Family AT1G04880 58.7 3.5e-105 379.0
Hepe01g2371 . 135 414 ARID Transcription Factor Family AT1G20910 66.4 4.6e-101 365.2
Hepe06g0848 . 236 502 ARID Transcription Factor Family AT1G20910 60.7 3.7e-90 328.9
Hepe01g2311 . 16 309 ARID Transcription Factor Family AT1G76110 66.8 1.9e-111 399.4
Hepe01g2371 . 134 444 ARID Transcription Factor Family AT1G76510 72.8 3.9e-125 445.3
Hepe06g0848 . 223 532 ARID Transcription Factor Family AT1G76510 62.5 1.3e-109 393.7
Hepe02g1572 . 2 770 ARID Transcription Factor Family AT3G43240 59.0 7.6e-262 900.2
Hepe03g1390 . 2 772 ARID Transcription Factor Family AT3G43240 57.7 1.5e-257 885.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54911 PF00011 HSP20 6.40E-05 CL0190 Hepe TR