Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2379 ATGCGCTCTCGCTCAGTGCTCAGAGTGACTGCAATGGCGCTATTTCAGCCACACACTCCACCTTCTCCAATTTCCTCATTCTACGGGAGTTCTCTTCAACAACTCCGTTGGCGCACCACCACAGCCCTTAATCTTCGAAACAGTCACTCTATCCCTCATCGTTCCATTTGCAGAGCTTCATGGCAGGAGCTTGCTGGGGTTTTGATATTCTCCGCAATTCCCTTCACGGCTGTGAAAGCCATCGCCAATAGCCCACTTGGAGACTCGCTCCAGAGCCAATTGGAAAAGAAGAAAAAAGCTGCCGTAGCCAACTCTTCCAACTTCAAGGTCCTTGCCGAGGAGGCTAGAAAACATAGCTCATGGTATGGAGAAGAGCGTCCTCGCTGGCTTGGTCCAATACCATATGATTATCCCAAATATCTGACAGGTGAACTGCCGGGTGATTATGGATTCGATATTGCAGGTCTGAGTGAGGACCCCGTGGCTTTTCAGAAGTACTTCAACTTTGAAATACTGCATGCTCGTTGGGCTATGTTAGCATCCCTTGGTGCTTTAATTCCAGAGATCTTAGATATTTTTGGAGCTTTTCATTTCACTGAACCCATCTGGTGGCGAGTGGGCTATTCAAAACTTAAGGGAGATACACTCGACTATCTTGGAATACCAGGGCTACATTTAGCTGGAAGCCAAGGAGTGATTGTCATTGCAATTTGCCAAGCCATTTTAATGGTTGGACCCGAGTATGCAAGATATTGTGGCATAGAGGCATTGGAGCCTCTGGGAATATATCTACCGGGGGATATAAATTATCCAGGTGGCGTGTTGTTTGATCCCTTGAACCTGTCCAAGGATGCTGCATATTTTGAGGAACTGAAGGTAAAAGAGATTAAAAATGGGCGGTTAGCCATGGTTGCCTGGCTAGGATTTTACAGTCAAGCTGCGTTGACGGCATGGAGCAGCCTAGCTTTTTAA 972 47.02 MRSRSVLRVTAMALFQPHTPPSPISSFYGSSLQQLRWRTTTALNLRNSHSIPHRSICRASWQELAGVLIFSAIPFTAVKAIANSPLGDSLQSQLEKKKKAAVANSSNFKVLAEEARKHSSWYGEERPRWLGPIPYDYPKYLTGELPGDYGFDIAGLSEDPVAFQKYFNFEILHARWAMLASLGALIPEILDIFGAFHFTEPIWWRVGYSKLKGDTLDYLGIPGLHLAGSQGVIVIAICQAILMVGPEYARYCGIEALEPLGIYLPGDINYPGGVLFDPLNLSKDAAYFEELKVKEIKNGRLAMVAWLGFYSQAALTAWSSLAF 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 88170816 88178775 + Hsped.01g23790.1 Hepe01g2379 561489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2379 323 Pfam Chlorophyll A-B binding protein 138 313 IPR022796 -
Hepe01g2379 323 FunFam Chlorophyll a-b binding protein, chloroplastic 128 322 - -
Hepe01g2379 323 Gene3D Chlorophyll a/b binding protein domain 128 322 - -
Hepe01g2379 323 SUPERFAMILY Chlorophyll a-b binding protein 120 317 - -
Hepe01g2379 323 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 93 316 IPR001344 GO:0009416(PANTHER)|GO:0009765(InterPro)|GO:0009768(PANTHER)|GO:0016020(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2379 Hepe-Chr1:88170816 Hepe07g1095 Hepe-Chr7:18324693 2.01e-53 dispersed
Hepe01g2379 Hepe-Chr1:88170816 Hepe07g2501 Hepe-Chr7:69346219 2.56e-25 transposed
Hepe01g2379 Hepe-Chr1:88170816 Hepe09g0112 Hepe-Chr9:895168 4.58e-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2379 K14172 - csv:101209460 551.977