Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe01g2383 ATGGCTACCGAGAATTATGCTGAGAATCGGATCCTGGGGAGAGGTGGAAACGGAACTGTGTACAAAGGAATTCTACCGGACGGCAAAAATGTGGCCATCAAGAAGTCCAAAATAGCGGATGAAACTCAAATCGAACAGTTCATCAATGAAGTAATAATTCTGACCCAAATCAACCACCGAAATGTGGTGAAGCTGATGGGATGTTGCCTGGAGACGGAGGTTCCCTTGCTCGTCTACGAATTCGTGTCGAATGGGACTCTACACAGCCACATTCATCAAAGAAACAGCTTCGGTAATAATTCCATGTCTTGGGAAAATCGTGTCAGAATAGCCACCGAAACGGCAGCGGCTCTTTCATATCTCCACTCTGCAGCGTCCACACCCATCATTCACAGAGACGTCAAGTCGGCCAACATATTGTTAGACAAGAAATGCACGGCCAAAGTAGCCGATTTCGGAGCCTCCAGGTTCATCCCAATCGATCAGTCGCAGATAACGACGTTGGTTCAGGGGACGTTCGGTTACCTGGACCCGGAATATTTCCAAACGAGCCAATTGACGGAGAAGAGCGACGTGTACAGCTTTGGAGTTGTGTTGTTGGAGCTGTTGACCGGGGAGTTGCCGGTGTCTTTCGCGAGATCGGAATCCCAGAGAAACCTATCGTCGTATTTTGTAGCGTCATTGCGGCAGAAGAGGCTATTTGGAATAGTGGAGGGGAGGGTGCTGAGGGAGGGAAAGAGAGAGGAACTGATAGCAGCGGCGGAGTTGGCGAGGAGATGCCTGAAACTGAAGGGAGAAGATAGGCCGACGATGAGAGAAGTGGTGTCGGAGCTAGAAAGGTTGTCGAATCGGAACCGACCAGAGGAGACAGAAGTTTTGCTAGAACAGGAGGCAGAGGATCTATACCCCATAGCCACAGCATACGCTTACGACAATGGATCTTCCACTTCCACTTCCACTACTACCCTGCCTTCGCTTCCCTTCCACCTCTCACGATAA 999 49.95 MATENYAENRILGRGGNGTVYKGILPDGKNVAIKKSKIADETQIEQFINEVIILTQINHRNVVKLMGCCLETEVPLLVYEFVSNGTLHSHIHQRNSFGNNSMSWENRVRIATETAAALSYLHSAASTPIIHRDVKSANILLDKKCTAKVADFGASRFIPIDQSQITTLVQGTFGYLDPEYFQTSQLTEKSDVYSFGVVLLELLTGELPVSFARSESQRNLSSYFVASLRQKRLFGIVEGRVLREGKREELIAAAELARRCLKLKGEDRPTMREVVSELERLSNRNRPEETEVLLEQEAEDLYPIATAYAYDNGSSTSTSTTTLPSLPFHLSR 332
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 88196568 88197566 + Hsped.01g23830.1 Hepe01g2383 561493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe01g2383 332 FunFam Wall-associated receptor kinase 2 82 300 - -
Hepe01g2383 332 ProSiteProfiles Protein kinase domain profile. 6 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g2383 332 Gene3D Phosphorylase Kinase; domain 1 1 81 - -
Hepe01g2383 332 SMART serkin_6 6 281 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe01g2383 332 SUPERFAMILY Protein kinase-like (PK-like) 2 279 IPR011009 -
Hepe01g2383 332 Gene3D Transferase(Phosphotransferase) domain 1 82 301 - -
Hepe01g2383 332 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Hepe01g2383 332 FunFam Wall-associated receptor kinase-like 10 24 81 - -
Hepe01g2383 332 CDD STKc_IRAK 12 281 - -
Hepe01g2383 332 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 2 285 IPR045274 GO:0004674(PANTHER)|GO:0005886(PANTHER)|GO:0006468(PANTHER)|GO:0007166(InterPro)|GO:0007166(PANTHER)
Hepe01g2383 332 MobiDBLite consensus disorder prediction 313 332 - -
Hepe01g2383 332 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe01g2383 332 Pfam Protein kinase domain 6 276 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g2383 Hepe-Chr1:88196568 Hepe10g1945 Hepe-Chr10:56330880 1.10e-117 dispersed
Hepe01g2383 Hepe-Chr1:88196568 Hepe02g2738 Hepe-Chr2:75877020 1.78e-112 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72507 PF00069 Pkinase 4.40E-51 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe01g2383 - - - 0.0