Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0007 ATGTTCCATCCCAAGAAAGCTTCCAGTATGAATTCTCATCATGACAGAGATCAGAGAGGGATGTGCGTTCAAGGAGACTCCGGCCTCGTCCTCACCACCGACCCAAAGCCTCGCCTCCGATGGACGGTTGAGCTTCATGAGCGCTTCGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACCCCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTCGGAAAGCAGCCTCACAAGGAATTCAACGATCATTCAATTAAGGATGGTATGAGAGCTTCAGGTCTAGAACTTCATCGAAACACGCCTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAATTAGAGGTACAAAGACACCTGCAGTTGAGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTTGCGGGTGAAAACATGGGTAACTCCGGCGCCGGGGGCTTATTATACAGTAAGCCAAATAATAATAATAATAATAATAATAATAATAATAATAGCGCCCCTATTGGCATTGCCGATCATATTGTTGCCTCCCCTCTCGGCTTCCCTTCTTTCCAAGACCTAAACCTCTACGGAGGAGGAGGCGATCTTCACGAAAACGTGGGCCTCCTCGATGGATTCAACAACGAGTTGTGCTTGGGAAAGAAGAAGCCGCCCAGAGCTGCCTATGCGGCCTCCTCCGGAAAAGGCCCCTTGGACTGGCCGGATGATCTCCGCCTACAGCAACAACAAGAAGAAGATGATTTCAAAGCCATTCATTGTGGAAGAGAGCATTTGGAGGAAATGTATGAGGCCAAGCCAGTGGTGTCCGAGGACGATGAGGGCATCAATAATAATAATAATGCCTCCCTAAAGCTTCAGAGGCCCTCCCCGAGAAGGACACCCCTACATTCGCCTTTTGCTTAA 1017 48.08 MFHPKKASSMNSHHDRDQRGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTPSSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMGNSGAGGLLYSKPNNNNNNNNNNNNSAPIGIADHIVASPLGFPSFQDLNLYGGGGDLHENVGLLDGFNNELCLGKKKPPRAAYAASSGKGPLDWPDDLRLQQQQEEDDFKAIHCGREHLEEMYEAKPVVSEDDEGINNNNNASLKLQRPSPRRTPLHSPFA 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 242462 244066 - Hsped.02g00070.1 Hepe02g0007 561508

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0007 338 MobiDBLite consensus disorder prediction 300 338 - -
Hepe02g0007 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 199 IPR046955 GO:0003700(InterPro)
Hepe02g0007 338 MobiDBLite consensus disorder prediction 1 20 - -
Hepe02g0007 338 SUPERFAMILY Homeodomain-like 35 91 IPR009057 -
Hepe02g0007 338 Pfam Myb-like DNA-binding domain 38 88 IPR001005 -
Hepe02g0007 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 93 IPR017930 -
Hepe02g0007 338 FunFam Myb family transcription factor 35 93 - -
Hepe02g0007 338 Pfam MYB-CC type transfactor, LHEQLE motif 131 171 IPR025756 -
Hepe02g0007 338 NCBIfam myb-like DNA-binding domain, SHAQKYF class 36 91 IPR006447 GO:0003677(InterPro)
Hepe02g0007 338 Gene3D - 35 93 - -
Hepe02g0007 338 MobiDBLite consensus disorder prediction 310 325 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0007 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0007 Hepe-Chr2:242462 Hepe05g1761 Hepe-Chr5:67921590 2.70e-47 dispersed
Hepe01g1535 Hepe-Chr1:80582099 Hepe02g0007 Hepe-Chr2:242462 4.82e-15 wgd
Hepe02g0007 Hepe-Chr2:242462 Hepe08g0654 Hepe-Chr8:5829050 5.40e-105 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g1065 . 104 424 G2-like Transcription Factor Family AT5G16560 50.2 8.5e-50 194.9
Hepe06g1799 . 192 394 G2-like Transcription Factor Family AT5G16560 51.2 1.5e-38 157.5
Hepe01g1720 . 10 177 G2-like Transcription Factor Family AT5G42630 60.4 4.3e-43 171.8
Hepe10g0690 . 17 169 G2-like Transcription Factor Family AT5G42630 60.6 3.6e-42 168.7
Hepe02g2703 . 1 262 G2-like Transcription Factor Family AT1G25550 51.5 1.1e-53 207.2
Hepe01g1219 . 19 257 G2-like Transcription Factor Family AT1G25550 50.6 6.9e-51 198.0
Hepe10g1262 . 1 304 G2-like Transcription Factor Family AT3G46640 50.3 2.0e-62 236.5
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT5G05090 55.5 4.3e-74 275.0
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT5G05090 51.7 3.1e-64 242.3
Hepe05g1761 . 12 313 G2-like Transcription Factor Family AT4G13640 57.5 1.3e-63 240.4
Hepe06g1901 . 149 404 G2-like Transcription Factor Family AT3G04450 52.5 3.3e-54 209.5
Hepe05g1761 . 12 265 G2-like Transcription Factor Family AT3G24120 62.8 1.6e-77 286.6
Hepe02g0007 . 20 170 G2-like Transcription Factor Family AT3G24120 59.5 9.1e-41 164.5
Hepe08g0654 . 22 167 G2-like Transcription Factor Family AT3G24120 60.8 4.5e-40 162.2
Hepe04g1685 . 31 149 G2-like Transcription Factor Family AT3G24120 67.2 2.7e-37 152.9
Hepe02g0007 . 1 333 G2-like Transcription Factor Family AT1G79430 56.3 7.2e-85 311.2
Hepe08g0654 . 1 361 G2-like Transcription Factor Family AT1G79430 54.6 9.1e-80 294.3
Hepe05g1761 . 37 201 G2-like Transcription Factor Family AT1G79430 61.2 3.5e-39 159.5
Hepe04g1684 . 84 316 G2-like Transcription Factor Family AT2G01060 61.5 8.0e-56 214.2
Hepe04g0521 . 1 300 G2-like Transcription Factor Family AT3G10760 62.3 2.0e-92 336.3
Hepe05g0644 . 1 277 G2-like Transcription Factor Family AT3G10760 52.6 1.9e-71 266.5
Hepe04g0521 . 1 192 G2-like Transcription Factor Family AT2G40970 63.8 4.6e-62 235.0
Hepe05g0644 . 1 176 G2-like Transcription Factor Family AT2G40970 61.3 3.0e-53 205.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001069 3 4 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 3 3 2 2 2 2 2 2 2 1 6 5 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54916 PF00249 Myb_DNA-binding 1.80E-06 CL0123 Hepe TF