Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0007 ATGTTCCATCCCAAGAAAGCTTCCAGTATGAATTCTCATCATGACAGAGATCAGAGAGGGATGTGCGTTCAAGGAGACTCCGGCCTCGTCCTCACCACCGACCCAAAGCCTCGCCTCCGATGGACGGTTGAGCTTCATGAGCGCTTCGTCGATGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCTACCCCAAAGACCATCATGAGAGTTATGGGTGTAAAGGGTCTTACTCTTTACCACCTCAAGAGCCATCTCCAGAAATTTAGACTCGGAAAGCAGCCTCACAAGGAATTCAACGATCATTCAATTAAGGATGGTATGAGAGCTTCAGGTCTAGAACTTCATCGAAACACGCCTTCTTCATCCAATATGATCAACCGCACCATGAATGAGATGCAAATGGAGGTGCAGAGAAGATTGCATGAGCAATTAGAGGTACAAAGACACCTGCAGTTGAGGATCGAGGCACAAGGGAAGTATATGCAGAGTATATTAGAAAAGGCTTGTCAAACCCTTGCGGGTGAAAACATGGGTAACTCCGGCGCCGGGGGCTTATTATACAGTAAGCCAAATAATAATAATAATAATAATAATAATAATAATAATAGCGCCCCTATTGGCATTGCCGATCATATTGTTGCCTCCCCTCTCGGCTTCCCTTCTTTCCAAGACCTAAACCTCTACGGAGGAGGAGGCGATCTTCACGAAAACGTGGGCCTCCTCGATGGATTCAACAACGAGTTGTGCTTGGGAAAGAAGAAGCCGCCCAGAGCTGCCTATGCGGCCTCCTCCGGAAAAGGCCCCTTGGACTGGCCGGATGATCTCCGCCTACAGCAACAACAAGAAGAAGATGATTTCAAAGCCATTCATTGTGGAAGAGAGCATTTGGAGGAAATGTATGAGGCCAAGCCAGTGGTGTCCGAGGACGATGAGGGCATCAATAATAATAATAATGCCTCCCTAAAGCTTCAGAGGCCCTCCCCGAGAAGGACACCCCTACATTCGCCTTTTGCTTAA 1017 48.08 MFHPKKASSMNSHHDRDQRGMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTPSSSNMINRTMNEMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMGNSGAGGLLYSKPNNNNNNNNNNNNSAPIGIADHIVASPLGFPSFQDLNLYGGGGDLHENVGLLDGFNNELCLGKKKPPRAAYAASSGKGPLDWPDDLRLQQQQEEDDFKAIHCGREHLEEMYEAKPVVSEDDEGINNNNNASLKLQRPSPRRTPLHSPFA 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 242462 244066 - Hsped.02g00070.1 Hepe02g0007 561508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0007 338 MobiDBLite consensus disorder prediction 300 338 - -
Hepe02g0007 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 199 IPR046955 GO:0003700(InterPro)
Hepe02g0007 338 MobiDBLite consensus disorder prediction 1 20 - -
Hepe02g0007 338 SUPERFAMILY Homeodomain-like 35 91 IPR009057 -
Hepe02g0007 338 Pfam Myb-like DNA-binding domain 38 88 IPR001005 -
Hepe02g0007 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 93 IPR017930 -
Hepe02g0007 338 FunFam Myb family transcription factor 35 93 - -
Hepe02g0007 338 Pfam MYB-CC type transfactor, LHEQLE motif 131 171 IPR025756 -
Hepe02g0007 338 NCBIfam myb-like DNA-binding domain, SHAQKYF class 36 91 IPR006447 GO:0003677(InterPro)
Hepe02g0007 338 Gene3D - 35 93 - -
Hepe02g0007 338 MobiDBLite consensus disorder prediction 310 325 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0007 Hepe-Chr2:242462 Hepe05g1761 Hepe-Chr5:67921590 2.70e-47 dispersed
Hepe01g1535 Hepe-Chr1:80582099 Hepe02g0007 Hepe-Chr2:242462 4.82e-15 wgd
Hepe02g0007 Hepe-Chr2:242462 Hepe08g0654 Hepe-Chr8:5829050 5.40e-105 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54916 PF00249 Myb_DNA-binding 1.80E-06 CL0123 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0007 - - - 0.0