Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0012 ATGGATATTTGCTATCAAATCTTGATCCGAGTTCTACTTTTTTTTATTTCTCCTTTCATTTCTAGCATTCTCACGATAGTGCCCTTATTTTTCTTGGATGTTAAAGAAGAAGAATTAGGGTTTAGGAGGAATCGAAGCTTGGCCAAGGTTAGATCAGGAACTGGAAATCAAGATCAATCAGAAATGGTGGCTACCAAGGCTAAAGTCTGCCTAGATGCGGCTCTGCCTACTGTGGATAATCGCACCCGCAGGAGTGCAATGGGAAGTTTTAAGGTTTATACAGAGAAAGATAAGATTAAAGCTGATTCCAGTTGCAAGAAACCTGTGACGATAAAGAAGGAGTCTTCAACGGATTGTGTGACTCAACCAAAGTTGAAGGGAGGCCTGCAACACTCAGAGAAGAACAGGGAGAAAATTGAAATCTCTGGGGCCAAAAGCACGAGAAGAAGAGCATTGGTAGATGTGAGTAATGTCCGAGCCAACTCTTCTAGGAAAACGATGCAAAATGGCTCTAAGCATACGGTTTCAACTGGAACTAGAGCTAGCACTGCTGTCGTCAGTGTCTCATTTAGGAGATCATTGGAAAAAACAATGAAGAATGCAGGGGAAGCTGTTGGTGACTTACATGCTTCAGAAAAAGGGCGTGTTAAAGATTCAAAAAGTTGTTCGGTCAATCAAAAAAACAAAACAGATGGTCCCTGCAGTGATTCCAATACTGTTAATGCCAGGAGGTCTTTACCAATACTAAAGAGGATGAATCAGGCAAATGCTTCGAACCCAAAGGAAGTTACCGAGAGGCCAGAAAAAACCAATCGATCTCAAGCATGTTTGACTAAATCTGGCAAGAATGCAGCAACCCAAGCAAAAAATACGAGAAGTCAGCCATGGAGGAACCGAGTGAGCGATGGCTTCATTATAATGGGTCAAGCCAAGGTGGACACCAATGCACTGTCGAAAAAGTCTAGTAAGCCCATTGTAAGGACCATCAAGAAGGCTTCTGGTACTCAAGAGGCATCAAAACCCAAATATGCATCAGTTGTAATTAAATCGATTTCTAGTACTACATCATCATCCAAGATTGTGGAACCCTCAGCATCTCTTTGTGAGGATATAACTAATGTGTCTATTCAAGAGAAGAATGCATCTGAACCTACTTGTAATCCAAGTACAAGTACGGATTTCGCTGTCAAGAAAAAAGTTGGTCGTAGGAGATCATATACATCCTTGTTGGTCGCTGGAGCAAAGTTGCTGGATAAATGTGCTGGAGTTACGGAGTTAGCTAACCTACCCAGTATTGACAATGACTGTAACCAAATGGAGGTTGCTGAATACGTTGAGGAGATATATCATTATTATTGGGTCACAGAGGCACAAAGTTCATCTCTTTCAAATTACTTATCAGTACAAAAAGAAATTAACCCCCTTATGCGAGGCATTTTGATCAACTGGTTGATTGAAGTACACTTCAAATTTGATTTGATGCCTGAAACACTATTTCTCTCTATTACATTGTTTGATCGGTATCTCTCCCAAGTCATAATCAAGAAGAATGAAATGCAGTTGGTTGGTCTTACTGCACTGTTATTGGCATCGAAATATGAAGATTTTTGGCATCCTAGGGTTAAAGATCTAATTAGCATTTCAGCTGAGTCCTACTCAAGAGAGCAAATGCTACAAATGGAAGCACTTATTCTCAAGAAGTTGAAGTTTCGCTTGAATATGCCTACTCCATATGTTTTCATGTTAAGATTTCTCAAGGCTGCTCAGTCGAATACTCAGCTTGAACACTTGTCATTTTATATGATTGAGCTGGCCTTGGTTGAATATGAAGCTCTTAGTTTTAAGCCGTCGTTGTTATGTGCATCGGCTCTATATGTTGCACGGTGTACATTGCGGATGAGTCCATACTGGACACCACTACTAAACAAACATACATGCTACGAAGTGTCCCAAATAAGAGAATGCGCTGAGATGATCTTGAAATTTCACCAATCTGCTCAAAGGGGACAGCTGAAAGTTACATATGAGAAGTACATGAAATCTGATTCGAATGGTGTTGCGGCTGTAAAGCCACTGGACAAGCTTCCTCTTTGA 2094 40.69 MDICYQILIRVLLFFISPFISSILTIVPLFFLDVKEEELGFRRNRSLAKVRSGTGNQDQSEMVATKAKVCLDAALPTVDNRTRRSAMGSFKVYTEKDKIKADSSCKKPVTIKKESSTDCVTQPKLKGGLQHSEKNREKIEISGAKSTRRRALVDVSNVRANSSRKTMQNGSKHTVSTGTRASTAVVSVSFRRSLEKTMKNAGEAVGDLHASEKGRVKDSKSCSVNQKNKTDGPCSDSNTVNARRSLPILKRMNQANASNPKEVTERPEKTNRSQACLTKSGKNAATQAKNTRSQPWRNRVSDGFIIMGQAKVDTNALSKKSSKPIVRTIKKASGTQEASKPKYASVVIKSISSTTSSSKIVEPSASLCEDITNVSIQEKNASEPTCNPSTSTDFAVKKKVGRRRSYTSLLVAGAKLLDKCAGVTELANLPSIDNDCNQMEVAEYVEEIYHYYWVTEAQSSSLSNYLSVQKEINPLMRGILINWLIEVHFKFDLMPETLFLSITLFDRYLSQVIIKKNEMQLVGLTALLLASKYEDFWHPRVKDLISISAESYSREQMLQMEALILKKLKFRLNMPTPYVFMLRFLKAAQSNTQLEHLSFYMIELALVEYEALSFKPSLLCASALYVARCTLRMSPYWTPLLNKHTCYEVSQIRECAEMILKFHQSAQRGQLKVTYEKYMKSDSNGVAAVKPLDKLPL 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 280260 286213 + Hsped.02g00120.1 Hepe02g0012 561513

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0012 697 PANTHER CYCLINS 430 679 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe02g0012 697 MobiDBLite consensus disorder prediction 208 224 - -
Hepe02g0012 697 ProSitePatterns Cyclins signature. 477 508 IPR048258 -
Hepe02g0012 697 MobiDBLite consensus disorder prediction 253 297 - -
Hepe02g0012 697 MobiDBLite consensus disorder prediction 225 241 - -
Hepe02g0012 697 MobiDBLite consensus disorder prediction 161 180 - -
Hepe02g0012 697 Pfam Cyclin, C-terminal domain 575 691 IPR004367 -
Hepe02g0012 697 SMART Cyclin_C_2 575 692 IPR004367 -
Hepe02g0012 697 MobiDBLite consensus disorder prediction 208 241 - -
Hepe02g0012 697 MobiDBLite consensus disorder prediction 270 297 - -
Hepe02g0012 697 SUPERFAMILY Cyclin-like 438 573 IPR036915 -
Hepe02g0012 697 Gene3D - 567 696 - -
Hepe02g0012 697 Pfam Cyclin, N-terminal domain 447 573 IPR006671 -
Hepe02g0012 697 CDD CYCLIN_CCNB1-like_rpt1 441 570 - -
Hepe02g0012 697 Gene3D - 461 566 - -
Hepe02g0012 697 FunFam putative cyclin-B3-1 isoform X3 571 696 - -
Hepe02g0012 697 SUPERFAMILY Cyclin-like 574 694 IPR036915 -
Hepe02g0012 697 FunFam Cyclin N-terminal domain containing 2 462 570 - -
Hepe02g0012 697 SMART cyclin_7 482 566 IPR013763 -
Hepe02g0012 697 SMART cyclin_7 579 661 IPR013763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0012 K21777 - - csv:101213908 983.015
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0012 Hepe-Chr2:280260 Hepe08g0180 Hepe-Chr8:1558417 1.44e-63 dispersed
Hepe02g0012 Hepe-Chr2:280260 Hepe01g2047 Hepe-Chr1:85134402 1.11e-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1155 Blo04g00460 . . . . . . . . . . . . . Sed04g3556 . . Bhi05g01991 Tan02g0023 Cmetu01g1284 . Hepe02g0012 . . . . . . . . . . . . . . Csa07g01213 . . . . . . Bpe15g00922 . Bma03g00492 . . . . . . . . Cpe15g00905 . . . . . . . . . . . . . . . . . Chy01g00850 Cme01g01500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012027 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 30