Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0012 ATGGATATTTGCTATCAAATCTTGATCCGAGTTCTACTTTTTTTTATTTCTCCTTTCATTTCTAGCATTCTCACGATAGTGCCCTTATTTTTCTTGGATGTTAAAGAAGAAGAATTAGGGTTTAGGAGGAATCGAAGCTTGGCCAAGGTTAGATCAGGAACTGGAAATCAAGATCAATCAGAAATGGTGGCTACCAAGGCTAAAGTCTGCCTAGATGCGGCTCTGCCTACTGTGGATAATCGCACCCGCAGGAGTGCAATGGGAAGTTTTAAGGTTTATACAGAGAAAGATAAGATTAAAGCTGATTCCAGTTGCAAGAAACCTGTGACGATAAAGAAGGAGTCTTCAACGGATTGTGTGACTCAACCAAAGTTGAAGGGAGGCCTGCAACACTCAGAGAAGAACAGGGAGAAAATTGAAATCTCTGGGGCCAAAAGCACGAGAAGAAGAGCATTGGTAGATGTGAGTAATGTCCGAGCCAACTCTTCTAGGAAAACGATGCAAAATGGCTCTAAGCATACGGTTTCAACTGGAACTAGAGCTAGCACTGCTGTCGTCAGTGTCTCATTTAGGAGATCATTGGAAAAAACAATGAAGAATGCAGGGGAAGCTGTTGGTGACTTACATGCTTCAGAAAAAGGGCGTGTTAAAGATTCAAAAAGTTGTTCGGTCAATCAAAAAAACAAAACAGATGGTCCCTGCAGTGATTCCAATACTGTTAATGCCAGGAGGTCTTTACCAATACTAAAGAGGATGAATCAGGCAAATGCTTCGAACCCAAAGGAAGTTACCGAGAGGCCAGAAAAAACCAATCGATCTCAAGCATGTTTGACTAAATCTGGCAAGAATGCAGCAACCCAAGCAAAAAATACGAGAAGTCAGCCATGGAGGAACCGAGTGAGCGATGGCTTCATTATAATGGGTCAAGCCAAGGTGGACACCAATGCACTGTCGAAAAAGTCTAGTAAGCCCATTGTAAGGACCATCAAGAAGGCTTCTGGTACTCAAGAGGCATCAAAACCCAAATATGCATCAGTTGTAATTAAATCGATTTCTAGTACTACATCATCATCCAAGATTGTGGAACCCTCAGCATCTCTTTGTGAGGATATAACTAATGTGTCTATTCAAGAGAAGAATGCATCTGAACCTACTTGTAATCCAAGTACAAGTACGGATTTCGCTGTCAAGAAAAAAGTTGGTCGTAGGAGATCATATACATCCTTGTTGGTCGCTGGAGCAAAGTTGCTGGATAAATGTGCTGGAGTTACGGAGTTAGCTAACCTACCCAGTATTGACAATGACTGTAACCAAATGGAGGTTGCTGAATACGTTGAGGAGATATATCATTATTATTGGGTCACAGAGGCACAAAGTTCATCTCTTTCAAATTACTTATCAGTACAAAAAGAAATTAACCCCCTTATGCGAGGCATTTTGATCAACTGGTTGATTGAAGTACACTTCAAATTTGATTTGATGCCTGAAACACTATTTCTCTCTATTACATTGTTTGATCGGTATCTCTCCCAAGTCATAATCAAGAAGAATGAAATGCAGTTGGTTGGTCTTACTGCACTGTTATTGGCATCGAAATATGAAGATTTTTGGCATCCTAGGGTTAAAGATCTAATTAGCATTTCAGCTGAGTCCTACTCAAGAGAGCAAATGCTACAAATGGAAGCACTTATTCTCAAGAAGTTGAAGTTTCGCTTGAATATGCCTACTCCATATGTTTTCATGTTAAGATTTCTCAAGGCTGCTCAGTCGAATACTCAGCTTGAACACTTGTCATTTTATATGATTGAGCTGGCCTTGGTTGAATATGAAGCTCTTAGTTTTAAGCCGTCGTTGTTATGTGCATCGGCTCTATATGTTGCACGGTGTACATTGCGGATGAGTCCATACTGGACACCACTACTAAACAAACATACATGCTACGAAGTGTCCCAAATAAGAGAATGCGCTGAGATGATCTTGAAATTTCACCAATCTGCTCAAAGGGGACAGCTGAAAGTTACATATGAGAAGTACATGAAATCTGATTCGAATGGTGTTGCGGCTGTAAAGCCACTGGACAAGCTTCCTCTTTGA 2094 40.69 MDICYQILIRVLLFFISPFISSILTIVPLFFLDVKEEELGFRRNRSLAKVRSGTGNQDQSEMVATKAKVCLDAALPTVDNRTRRSAMGSFKVYTEKDKIKADSSCKKPVTIKKESSTDCVTQPKLKGGLQHSEKNREKIEISGAKSTRRRALVDVSNVRANSSRKTMQNGSKHTVSTGTRASTAVVSVSFRRSLEKTMKNAGEAVGDLHASEKGRVKDSKSCSVNQKNKTDGPCSDSNTVNARRSLPILKRMNQANASNPKEVTERPEKTNRSQACLTKSGKNAATQAKNTRSQPWRNRVSDGFIIMGQAKVDTNALSKKSSKPIVRTIKKASGTQEASKPKYASVVIKSISSTTSSSKIVEPSASLCEDITNVSIQEKNASEPTCNPSTSTDFAVKKKVGRRRSYTSLLVAGAKLLDKCAGVTELANLPSIDNDCNQMEVAEYVEEIYHYYWVTEAQSSSLSNYLSVQKEINPLMRGILINWLIEVHFKFDLMPETLFLSITLFDRYLSQVIIKKNEMQLVGLTALLLASKYEDFWHPRVKDLISISAESYSREQMLQMEALILKKLKFRLNMPTPYVFMLRFLKAAQSNTQLEHLSFYMIELALVEYEALSFKPSLLCASALYVARCTLRMSPYWTPLLNKHTCYEVSQIRECAEMILKFHQSAQRGQLKVTYEKYMKSDSNGVAAVKPLDKLPL 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 280260 286213 + Hsped.02g00120.1 Hepe02g0012 561513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0012 697 PANTHER CYCLINS 430 679 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Hepe02g0012 697 MobiDBLite consensus disorder prediction 208 224 - -
Hepe02g0012 697 ProSitePatterns Cyclins signature. 477 508 IPR048258 -
Hepe02g0012 697 MobiDBLite consensus disorder prediction 253 297 - -
Hepe02g0012 697 MobiDBLite consensus disorder prediction 225 241 - -
Hepe02g0012 697 MobiDBLite consensus disorder prediction 161 180 - -
Hepe02g0012 697 Pfam Cyclin, C-terminal domain 575 691 IPR004367 -
Hepe02g0012 697 SMART Cyclin_C_2 575 692 IPR004367 -
Hepe02g0012 697 MobiDBLite consensus disorder prediction 208 241 - -
Hepe02g0012 697 MobiDBLite consensus disorder prediction 270 297 - -
Hepe02g0012 697 SUPERFAMILY Cyclin-like 438 573 IPR036915 -
Hepe02g0012 697 Gene3D - 567 696 - -
Hepe02g0012 697 Pfam Cyclin, N-terminal domain 447 573 IPR006671 -
Hepe02g0012 697 CDD CYCLIN_CCNB1-like_rpt1 441 570 - -
Hepe02g0012 697 Gene3D - 461 566 - -
Hepe02g0012 697 FunFam putative cyclin-B3-1 isoform X3 571 696 - -
Hepe02g0012 697 SUPERFAMILY Cyclin-like 574 694 IPR036915 -
Hepe02g0012 697 FunFam Cyclin N-terminal domain containing 2 462 570 - -
Hepe02g0012 697 SMART cyclin_7 482 566 IPR013763 -
Hepe02g0012 697 SMART cyclin_7 579 661 IPR013763 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0012 Hepe-Chr2:280260 Hepe08g0180 Hepe-Chr8:1558417 1.44e-63 dispersed
Hepe02g0012 Hepe-Chr2:280260 Hepe01g2047 Hepe-Chr1:85134402 1.11e-42 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0012 K21777 - csv:101213908 983.015