Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0016 ATGGCAACCAAAAGGAGCGTCGGTACTCTGAAGGAGGCTGATTTGAAGGGAAAGAGGGTGTTTGTCAGGGTCGATCTCAACGTTCCTTTGGATGACAACTTCAACATCACCGATGATACCAGAATCCGTGCTGCTGTGCCTACCATTCAGTATTTGCTCGGCCATGGTGCTAGAGTCATCCTCTCCAGCCACTTGGGACGTCCAAAGGGTGTAACCCCAAAATACAGTTTGAAACCTCTTGTTCCCAGGCTTTCTGAGCTTCTTGTACTTCAGGTGGTAATGGCTGATGATTGTATTGGCGTGGAAGTTGAGAAGTTGGTCGCTGAATTACCTGAGGGAGGTGTATTGCTGCTTGAAAACGTGAGGTTTTACAAGGAGGAAGAGAAGAACGACCCTGAGTTTGCCAAAAAGTTGGCTTCCCTCGCGGATCTCTATGTTAATGATGCCTTTGGAACTGCTCACAGAGCCCACGCTTCCACAGAGGGTGTGGCTAAGTACTTGAAACCTTCTGTTGCTGGTTTCCTTATGCAGAAGGAACTTGACTACCTTGTTGGAGCTGTGTCTAATCCCAAGAGACCATTTGCTGCCATTGTTGGTGGTTCAAAGGTGTCGTCCAAGATTGGAGTGATTGAATCCTTGTTGGAGAAGGTTAACGTTCTTCTCCTGGGTGGAGGAATGATCTTTACCTTCTACAAGGCACAAGGTCACGCAGTGGGTTCATCACTTGTTGAAGAAGACAAGCTTGACCTCGCGAAATCGCTCATGGAGAAGGCAAAAGCCAAGGGAGTTTCTCTTTTGCTTCCAACTGATGTAGTGATAGCCGATAAATTTGCTGCTGATGCTAACAGCAAGATTGTGGCAGCATCAAGTATCCCAGATGGGTGGATGGGGTTGGATATTGGCCCTGATTCTATCAAGAGTTTCAGTGAAGCTTTGGATTCTACCCAAACCATTATCTGGAATGGACCTATGGGAGTGTTTGAGTTTGAGAAGTTTGCGCCTGGAACTGAGGCTATTGCGAGGAAGTTGGCTGATCTGGGTGCGAAGGGAGTGACCACCATAATTGGAGGAGGTGACTCAGTGGCGGCTGTTGAGAAGGTTGGGCTGGCGGATAAGATGAGCCACATCTCCACTGGTGGTGGTGCCAGCTTAGAGCTTCTTGAAGGAAAACCACTTCCTGGCGTTCTTGCCCTCGACGATGCTTGA 1206 48.42 MATKRSVGTLKEADLKGKRVFVRVDLNVPLDDNFNITDDTRIRAAVPTIQYLLGHGARVILSSHLGRPKGVTPKYSLKPLVPRLSELLVLQVVMADDCIGVEVEKLVAELPEGGVLLLENVRFYKEEEKNDPEFAKKLASLADLYVNDAFGTAHRAHASTEGVAKYLKPSVAGFLMQKELDYLVGAVSNPKRPFAAIVGGSKVSSKIGVIESLLEKVNVLLLGGGMIFTFYKAQGHAVGSSLVEEDKLDLAKSLMEKAKAKGVSLLLPTDVVIADKFAADANSKIVAASSIPDGWMGLDIGPDSIKSFSEALDSTQTIIWNGPMGVFEFEKFAPGTEAIARKLADLGAKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKPLPGVLALDDA 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 303027 305660 - Hsped.02g00160.1 Hepe02g0016 561517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0016 401 SUPERFAMILY Phosphoglycerate kinase 8 400 IPR036043 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 Gene3D - 8 184 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 Gene3D - 187 400 IPR015824 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 PANTHER PHOSPHOGLYCERATE KINASE 3 401 IPR001576 GO:0004618(InterPro)|GO:0004618(PANTHER)|GO:0005524(PANTHER)|GO:0005829(PANTHER)|GO:0006094(PANTHER)|GO:0006096(PANTHER)|GO:0006096(InterPro)|GO:0043531(PANTHER)
Hepe02g0016 401 FunFam Phosphoglycerate kinase 189 376 - -
Hepe02g0016 401 Pfam Phosphoglycerate kinase 10 390 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 Hamap Phosphoglycerate kinase [pgk]. 9 400 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 CDD Phosphoglycerate_kinase 10 400 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 FunFam Phosphoglycerate kinase 11 184 - -
Hepe02g0016 401 ProSitePatterns Phosphoglycerate kinase signature. 19 29 IPR015911 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 PIRSF Pgk 2 401 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 PRINTS Phosphoglycerate kinase family signature 113 128 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 PRINTS Phosphoglycerate kinase family signature 141 163 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 PRINTS Phosphoglycerate kinase family signature 172 194 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 PRINTS Phosphoglycerate kinase family signature 195 214 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 PRINTS Phosphoglycerate kinase family signature 376 393 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 PRINTS Phosphoglycerate kinase family signature 353 364 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 PRINTS Phosphoglycerate kinase family signature 36 58 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 PRINTS Phosphoglycerate kinase family signature 14 30 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
Hepe02g0016 401 PRINTS Phosphoglycerate kinase family signature 317 342 IPR001576 GO:0004618(InterPro)|GO:0006096(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0016 Hepe-Chr2:303027 Hepe08g0646 Hepe-Chr8:5766869 7.48e-241 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0016 K00927 - csv:101215513 734.947