Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0029 ATGGCAACAGATGAGATGAATATGAATGGGGGGAGCAGCAAAAAGGGTGGTGGTGCCCCATCGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGGCGGTGCGCTCAGGACTGCCTTTTTGCTCCTTATTTTCCCGCCGATCACCCCCACAAATTCTCTAGTGTTCACAAGGTCTTTGGAGCTAGTAATGTCACCAAATTGTTGCAGGAATTGGCAGAGCAGGTACGGAGCGACGCAGTGAGTTGGATGGTGTACGAGGCGAGGGCGAGGATTGGAGACCCGGTGTACAGCGGCAAGTGGATGCGCTACAACAGCAATTGGCGATGA 324 54.94 MATDEMNMNGGSSKKGGGAPSPCAACKLLRRRCAQDCLFAPYFPADHPHKFSSVHKVFGASNVTKLLQELAEQVRSDAVSWMVYEARARIGDPVYSGKWMRYNSNWR 107
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 441251 441857 - Hsped.02g00290.1 Hepe02g0029 561530

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0029 107 Pfam Lateral organ boundaries (LOB) domain 22 97 IPR004883 -
Hepe02g0029 107 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 21 95 - -
Hepe02g0029 107 ProSiteProfiles LOB domain profile. 21 107 IPR004883 -
Hepe02g0029 107 MobiDBLite consensus disorder prediction 1 20 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0029 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0029 Hepe-Chr2:441251 Hepe07g1643 Hepe-Chr7:57647791 2.81e-34 dispersed
Hepe02g0029 Hepe-Chr2:441251 Hepe08g0630 Hepe-Chr8:5603072 5.32e-42 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1042 . . . . . . . . . . . . . . Sed05g1854 Cpe04g00856 . Bhi05g02025 Tan02g0063 Cmetu01g1532 Lac12g0891 Hepe02g0029 . . Cla02g01814 Cam02g1919 Cec02g1940 Cco02g1984 Clacu02g1901 Cmu02g1848 Cre02g2163 . . . . . Csa07g01185 . . Blo15g00606 . . . . . . . Sed01g0750 . . . . . . . . Bhi10g00963 Tan05g0608 Cmetu11g1961 . Hepe08g0630 . . . . . . . . . . Csa06g01169 Chy11g01024 Cme01g01534
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000955 1 3 2 2 2 3 4 3 3 3 3 3 3 4 3 3 3 2 3 3 3 2 3 3 3 3 3 3 3 2 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54918 PF03195 LOB 5.40E-31 No_clan Hepe TF