Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0116 ATGGACCGCCGTGCTCGTACAAACCCATTTCTCTCCGAGCAAGAAGATCCCGAACCAACGTCGGACGACGGCTTGCCGGAGTCCCCCTCCGACGGCAATGACTCTAAACCCGCCGCCGGCACCCCGCCCAAAAAAAGTAGAAGGGGAGTGCAGAAAAGAGTGGTGTCCGTACCGATCGGCGACGTGGAGGGATCTAAGAGCAAAGGGGAAGCATATCCACCGTCCGATTCATGGGCATGGAGGAAATACGGCCAAAAGCCAATCAAAGGCTCTCCTTATCCCAGGGGATATTATCGATGTAGTAGCTCCAAGGGCTGCCCAGCAAGAAAGCAAGTAGAGAGAAGCCGTGTGGACCCCACCAAGCTCGTTATCACCTACGCTTTCGACCACAACCACCAACTCCCGGCCACCAAATCTCACCACCACCACCACCACAATTCCTCGCCGTCCTCCGCCGCGATCGCCGCCCCATCAGCAGCCGCCGACTCGTCCCCGGGGAGCACTACGACGTCGTCCTCCACTTCCTCCGGCGACCACATGAACGCCACCCCCTCTTCGCCGCAGCCGCCGACGGCGGTGTTCGCGAGTCAGCCGGAACTGGAACTCGGCGGCGACTCGATGATGATAAAACCGTGCATCGGTGATTTTGGATGGTTTGCTGACGTGGCGTACGATAGAATCCTGGAGGGCCCGCTTTTCGGGGGAGGCGATATGTTCGACGATGCCGATGTAATGGTTTTGTCGACGAGAGGAGATGACGAGGACGAGTCGTTATTTGCGGATCTTGGGGAATTGCCCGAAGGCTCGGTGGTTTTCGGCCGCCGGAGATCGGTCCAACCGGACGGGCCGAGCCGGACTTGTGGCAGAGTTTTAAACTGCTAG 882 58.84 MDRRARTNPFLSEQEDPEPTSDDGLPESPSDGNDSKPAAGTPPKKSRRGVQKRVVSVPIGDVEGSKSKGEAYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLVITYAFDHNHQLPATKSHHHHHHNSSPSSAAIAAPSAAADSSPGSTTTSSSTSSGDHMNATPSSPQPPTAVFASQPELELGGDSMMIKPCIGDFGWFADVAYDRILEGPLFGGGDMFDDADVMVLSTRGDDEDESLFADLGELPEGSVVFGRRRSVQPDGPSRTCGRVLNC 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1353391 1356330 + Hsped.02g01160.1 Hepe02g0116 561617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0116 293 Gene3D WRKY domain 62 136 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0116 293 MobiDBLite consensus disorder prediction 136 193 - -
Hepe02g0116 293 SUPERFAMILY WRKY DNA-binding domain 70 135 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0116 293 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 31 195 IPR044810 GO:0000976(PANTHER)|GO:0003700(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe02g0116 293 FunFam WRKY transcription factor 65 61 135 - -
Hepe02g0116 293 SMART WRKY_cls 74 134 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0116 293 Pfam WRKY DNA -binding domain 76 133 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0116 293 MobiDBLite consensus disorder prediction 1 114 - -
Hepe02g0116 293 MobiDBLite consensus disorder prediction 161 193 - -
Hepe02g0116 293 ProSiteProfiles WRKY domain profile. 75 135 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0116 Hepe-Chr2:1353391 Hepe04g2070 Hepe-Chr4:75521484 3.93e-33 dispersed
Hepe02g0116 Hepe-Chr2:1353391 Hepe07g1840 Hepe-Chr7:61214847 2.61e-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54925 PF03106 WRKY 1.10E-24 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0116 - - - 0.0