Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0121 ATGGTTGCCAAGGACAAATCCACCGCCAAGAAGCTTCAATCTCTCTCCAACAATGGCAGCGAACTCCATTTCCGCGGCGTTCGGAAGAGGCCTTGGGGCCGTTACGCCGCCGAGATCCGAGATCCCGGCAAGAAGAGCCGCGTTTGGCTAGGTACCTTCGACACGGCGGAAGAGGCGGCGCGTGCTTACGACACCGCCGCCCGCCAGTTCCGCGGCGCTAAGGCTAAAACCAATTTTCCTCTTCCTGAAGAGCTGATCGACGTTTCTCCTCAGAAGATCAACCAAAGCCCTAGCCCTAGCAGCACCGTCGAGTCCTCTTCCTCCTCCAGCCAGGAAAAAACTCCCTCGCCGGAGATCGTCCGTAGCTACGCCACCTCCGTCGGCGTCGGACGAACTTTTCCGTTCATTCAGCCTCAGTTTTTGCATCAGGTCGGCGGCGGCGGCGGAAACGGCGGCGTTCGTCCAGTTTTGTTCATGGACGCTTTTGGTAGGCCGGAGTTTGTCGCTCATGGATATCCTATACGGTTCGATCCGGCGACGGTGGATTTGACGGCGAGATTTTCCGGCGGGATCCAGAGCGATGCGGACTCATCGTCGGTAGTTGACTGCCGGCCGGCGAAGGAAATTCTGAATCTCGATCTTAACCTGGCTCCGCCGGTGGACGCTTGA 669 58.45 MVAKDKSTAKKLQSLSNNGSELHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAARQFRGAKAKTNFPLPEELIDVSPQKINQSPSPSSTVESSSSSSQEKTPSPEIVRSYATSVGVGRTFPFIQPQFLHQVGGGGGNGGVRPVLFMDAFGRPEFVAHGYPIRFDPATVDLTARFSGGIQSDADSSSVVDCRPAKEILNLDLNLAPPVDA 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1391661 1392909 + Hsped.02g01210.1 Hepe02g0121 561622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0121 222 Gene3D AP2/ERF domain 23 81 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g0121 222 MobiDBLite consensus disorder prediction 87 119 - -
Hepe02g0121 222 SUPERFAMILY DNA-binding domain 23 81 IPR016177 GO:0003677(InterPro)
Hepe02g0121 222 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 13 144 - -
Hepe02g0121 222 SMART rav1_2 23 86 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g0121 222 MobiDBLite consensus disorder prediction 89 119 - -
Hepe02g0121 222 MobiDBLite consensus disorder prediction 1 27 - -
Hepe02g0121 222 FunFam Ethylene-responsive transcription factor 2 23 81 - -
Hepe02g0121 222 PRINTS Ethylene responsive element binding protein signature 46 62 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g0121 222 PRINTS Ethylene responsive element binding protein signature 24 35 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g0121 222 ProSiteProfiles AP2/ERF domain profile. 23 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g0121 222 CDD AP2 23 80 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Hepe02g0121 222 Pfam AP2 domain 23 72 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0121 Hepe-Chr2:1391661 Hepe08g0590 Hepe-Chr8:5197278 2.10e-32 dispersed
Hepe01g1405 Hepe-Chr1:79285999 Hepe02g0121 Hepe-Chr2:1391661 6.78e-37 wgd
Hepe02g0121 Hepe-Chr2:1391661 Hepe04g1868 Hepe-Chr4:73631904 1.12e-39 wgd
Hepe02g0121 Hepe-Chr2:1391661 Hepe07g1895 Hepe-Chr7:62628319 8.96e-47 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54926 PF00847 AP2 1.30E-14 CL0081 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0121 K09286 - csv:101210659 310.457