Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe02g0121 | ATGGTTGCCAAGGACAAATCCACCGCCAAGAAGCTTCAATCTCTCTCCAACAATGGCAGCGAACTCCATTTCCGCGGCGTTCGGAAGAGGCCTTGGGGCCGTTACGCCGCCGAGATCCGAGATCCCGGCAAGAAGAGCCGCGTTTGGCTAGGTACCTTCGACACGGCGGAAGAGGCGGCGCGTGCTTACGACACCGCCGCCCGCCAGTTCCGCGGCGCTAAGGCTAAAACCAATTTTCCTCTTCCTGAAGAGCTGATCGACGTTTCTCCTCAGAAGATCAACCAAAGCCCTAGCCCTAGCAGCACCGTCGAGTCCTCTTCCTCCTCCAGCCAGGAAAAAACTCCCTCGCCGGAGATCGTCCGTAGCTACGCCACCTCCGTCGGCGTCGGACGAACTTTTCCGTTCATTCAGCCTCAGTTTTTGCATCAGGTCGGCGGCGGCGGCGGAAACGGCGGCGTTCGTCCAGTTTTGTTCATGGACGCTTTTGGTAGGCCGGAGTTTGTCGCTCATGGATATCCTATACGGTTCGATCCGGCGACGGTGGATTTGACGGCGAGATTTTCCGGCGGGATCCAGAGCGATGCGGACTCATCGTCGGTAGTTGACTGCCGGCCGGCGAAGGAAATTCTGAATCTCGATCTTAACCTGGCTCCGCCGGTGGACGCTTGA | 669 | 58.45 | MVAKDKSTAKKLQSLSNNGSELHFRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAARAYDTAARQFRGAKAKTNFPLPEELIDVSPQKINQSPSPSSTVESSSSSSQEKTPSPEIVRSYATSVGVGRTFPFIQPQFLHQVGGGGGNGGVRPVLFMDAFGRPEFVAHGYPIRFDPATVDLTARFSGGIQSDADSSSVVDCRPAKEILNLDLNLAPPVDA | 222 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 1391661 | 1392909 | + | Hsped.02g01210.1 | Hepe02g0121 | 561622 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe02g0121 | 222 | Gene3D | AP2/ERF domain | 23 | 81 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe02g0121 | 222 | MobiDBLite | consensus disorder prediction | 87 | 119 | - | - | |
Hepe02g0121 | 222 | SUPERFAMILY | DNA-binding domain | 23 | 81 | IPR016177 | GO:0003677(InterPro) | |
Hepe02g0121 | 222 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 13 | 144 | - | - | |
Hepe02g0121 | 222 | SMART | rav1_2 | 23 | 86 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe02g0121 | 222 | MobiDBLite | consensus disorder prediction | 89 | 119 | - | - | |
Hepe02g0121 | 222 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Hepe02g0121 | 222 | FunFam | Ethylene-responsive transcription factor 2 | 23 | 81 | - | - | |
Hepe02g0121 | 222 | PRINTS | Ethylene responsive element binding protein signature | 46 | 62 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe02g0121 | 222 | PRINTS | Ethylene responsive element binding protein signature | 24 | 35 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe02g0121 | 222 | ProSiteProfiles | AP2/ERF domain profile. | 23 | 80 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe02g0121 | 222 | CDD | AP2 | 23 | 80 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Hepe02g0121 | 222 | Pfam | AP2 domain | 23 | 72 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g0121 | Hepe-Chr2:1391661 | Hepe08g0590 | Hepe-Chr8:5197278 | 2.10e-32 | dispersed | |
Hepe01g1405 | Hepe-Chr1:79285999 | Hepe02g0121 | Hepe-Chr2:1391661 | 6.78e-37 | wgd | |
Hepe02g0121 | Hepe-Chr2:1391661 | Hepe04g1868 | Hepe-Chr4:73631904 | 1.12e-39 | wgd | |
Hepe02g0121 | Hepe-Chr2:1391661 | Hepe07g1895 | Hepe-Chr7:62628319 | 8.96e-47 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54926 | PF00847 | AP2 | 1.30E-14 | CL0081 | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe02g0121 | K09286 | - | csv:101210659 | 310.457 |