Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0123 ATGAGTAGTGTTTGCGCTGAGCAACAGAAATTTCAGTTTCCATTTCAATTTCAGTTTCAATTTCCTCCTTCTTGTTCTTCTTCTTCTTTGATTAACGACATTGACGTTCCGCCGAGGAAGCTTTTTGTTCGAGATCAGAACGGTGAAATGTGTTCTGATTCGCCGCGATTTTCGTTTGCTGTTGAATCTCTTTTGCAGAAATTTTTGCCGTTCAATGGTGAGGATGAGTTGGAGGAGGAGGACGGTGATCCGTATTCTTCCGATCATTTTCGGATGTATGAGTTTAAGGTGAGGCGGTGTACTCGTAGTCGGAGCCATGATTGGACGGATTGTCCGTTTGCTCATCCTGGTGAGAAGGCGCGCCGGAGGGATCCTCGTCGGTTTCATTACTCTGGCACCATGTGTCCGGAGTTTCGCCGCGGTGGTTGCGGCCGTGGTGATGGATGTGAGTTCGCTCATGGAGTTTTTGAGTGTTGGCTTCATCCGGCGAGGTATCGGACTGAGGCTTGTAAAGATGGAAAGAACTGTAAGAGGAAGGTTTGTTTCTTTGCTCATTCGCCTCGTGAGCTTCGTCTTTTGCCGCCGGTGACTAATTTTCAAGGCGGTGGCGGCGGCGGATCTTGTTCTTCGCCGAATAAGAAGAGTACTAATTCGACTCTTAGATCCGCTGCCGGTTCTAATCACTGCTGTATGTTTTGTCATTGTGGCGGAGCCGCCACCTCCTCGCCGACGTCGACGCTTTACGGAATGTCTCATCTGTCTCCGCCGCACTCGCCGCCGCTCTCTCCCGGAAAACCTCGATCAATGAATGGATTTTCGCCGATTTCAAGGTACAATAATCACGATCAGTCGAAGTTCAATGGAGTTTTGAGTTACAAGGATGCACTGACTGAGCTCATGAGCTCAATCGAATCCATGAATATCGATGACGCCAATGCCACTTTAGCTGCCGTCGCCGCAGCCTCAGCACCAAGACAGACGATTCCTTGGATCGATGTTTCATCTCTCAACGCTGAAGATCAACTGCAGTTTATTCTCTCACCTTCCACTCCAAATATCTCCGCCGCGTCGGCCAAATTTTCCGGCGAGAAAAAAGTTAGTAACGCCGACAATGGATGGGTCTCCGGCTCCGCCTCCGGTCCGGATCTCGGATGGGTTAATGATCTGCTGATGTAA 1176 49.57 MSSVCAEQQKFQFPFQFQFQFPPSCSSSSLINDIDVPPRKLFVRDQNGEMCSDSPRFSFAVESLLQKFLPFNGEDELEEEDGDPYSSDHFRMYEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRFHYSGTMCPEFRRGGCGRGDGCEFAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHSPRELRLLPPVTNFQGGGGGGSCSSPNKKSTNSTLRSAAGSNHCCMFCHCGGAATSSPTSTLYGMSHLSPPHSPPLSPGKPRSMNGFSPISRYNNHDQSKFNGVLSYKDALTELMSSIESMNIDDANATLAAVAAASAPRQTIPWIDVSSLNAEDQLQFILSPSTPNISAASAKFSGEKKVSNADNGWVSGSASGPDLGWVNDLLM 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1418342 1419517 - Hsped.02g01230.1 Hepe02g0123 561624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0123 391 Gene3D - 129 192 - -
Hepe02g0123 391 PANTHER UNKEMPT FAMILY MEMBER 55 353 IPR045234 -
Hepe02g0123 391 FunFam Zinc finger CCCH domain-containing protein 66 87 155 - -
Hepe02g0123 391 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872(InterPro)
Hepe02g0123 391 SMART c3hfinal6 164 187 IPR000571 GO:0046872(InterPro)
Hepe02g0123 391 SMART c3hfinal6 129 155 IPR000571 GO:0046872(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0123 Hepe-Chr2:1418342 Hepe08g2641 Hepe-Chr8:68409621 2.28e-62 dispersed
Hepe02g0123 Hepe-Chr2:1418342 Hepe09g0842 Hepe-Chr9:8293413 2.97e-68 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54927 None None None None Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0123 K23047 - csv:101211149 572.778