Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0129 ATGGCTCTTTTCTCATCCAAAGTCTTAATCTCGTTACTCGTCCAGTTATCTTTTCTATTTAACGGTCTGATCGCCAAACACGGTGACACCACCACCCATAACGACCACCACCACCACCATCGCGCCCGATCACCGACCCCGAACCCGAACCCGAACCCAAGGCTCCATCAAGCATTCCTTGCACTCCAAGCATGGAAAAAAGTAATTTACTCCGACCCAAAAAACCACACCACAAATTGGGTGGGGCCGTCAGTTTGCAACTACTTTGGAATATACTGTGCCCCATCTCTCGACGACCCAAATCTCCAAGTCGTCGCCGGAATCGACTTAAACCACGGCGACATCGCCGGATTCCTCCCTACCGAATTGGGTCTTTTAACAGAGCTTGCTCTGTTCCATCTCAACAGCAACCGTTTCTGCGGCATTTTGCCAAATTCTTTATCCAATTTATCTCTTCTCTTCGAACTCGATTTAAGCAACAACAGATTCGTAGGCCCTTTTCCTTCCGTTGTTCTTCATCTTCCCAAATTAAAATATCTCGATCTTCGATTCAACGAATTCGAAGGCTCAATTCCTCCTGAACTCTTCAACAAATCCCTCGACGCCATTTTTGTCAACAGCAACCGTTTCACCAACATTATCCCTCGAAACATCGGCGGAAAATCAGCCTCTGTGATTGTTTTTGCCAACAACAATTTAAAGGGTTGTCTTCCACCGACGATTGCAAGCTTTGCAAACAGTTTGGAAGAACTTTTGTTGATCAACACTAGTTTATCGGGCTGTTTGCCGCAAGAAATTGGGTTTTTGTACAAATTGAAGGTTTTGGATGTGAGTTTTAACAAATTAGTGGGTCCTTTGCCTTATAGTCTGGCTGGGTTAGCTCAATTGGAGCAATTGAATTTGGCCCACAATTTGTTTAGTGGGAATTTGTTTGAAGGTCTCTGTAACCTTCCGAATTTGGAGAATGTGAGGATTTCTTACAATTTCTTTTGTGAAGAAGAGGGGATTTGCCGGAATTTGACGGCGAAGGGGATTGGATTTGATGATCGTCGGAATTGTTTACCGGAGAAGCCGTTGCAGAGGAGTAAGAAGGAGTGTAGTGCGGTGGTTGAGCGTCCGGTGGATTGTTTTGCGCATCCGTGCGGCGGCGGCGGTGGATATGGTTCTAGTATTGCGGCGGTTCCGGCTTCGACGCCCGTTTCTTCACCTTATTCCGTTGTTGCCCCTGCCTACTTGTGA 1239 46.33 MALFSSKVLISLLVQLSFLFNGLIAKHGDTTTHNDHHHHHRARSPTPNPNPNPRLHQAFLALQAWKKVIYSDPKNHTTNWVGPSVCNYFGIYCAPSLDDPNLQVVAGIDLNHGDIAGFLPTELGLLTELALFHLNSNRFCGILPNSLSNLSLLFELDLSNNRFVGPFPSVVLHLPKLKYLDLRFNEFEGSIPPELFNKSLDAIFVNSNRFTNIIPRNIGGKSASVIVFANNNLKGCLPPTIASFANSLEELLLINTSLSGCLPQEIGFLYKLKVLDVSFNKLVGPLPYSLAGLAQLEQLNLAHNLFSGNLFEGLCNLPNLENVRISYNFFCEEEGICRNLTAKGIGFDDRRNCLPEKPLQRSKKECSAVVERPVDCFAHPCGGGGGYGSSIAAVPASTPVSSPYSVVAPAYL 412
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1454145 1455673 + Hsped.02g01290.1 Hepe02g0129 561630

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0129 412 MobiDBLite consensus disorder prediction 30 53 - -
Hepe02g0129 412 FunFam Leucine-rich repeat extensin-like protein 1 59 220 - -
Hepe02g0129 412 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 28 391 IPR051582 -
Hepe02g0129 412 SUPERFAMILY L domain-like 58 332 - -
Hepe02g0129 412 Pfam Leucine Rich Repeat 176 197 IPR001611 GO:0005515(InterPro)
Hepe02g0129 412 Pfam Leucine Rich Repeat 295 317 IPR001611 GO:0005515(InterPro)
Hepe02g0129 412 Pfam Leucine Rich Repeat 153 171 IPR001611 GO:0005515(InterPro)
Hepe02g0129 412 Pfam Leucine Rich Repeat 271 293 IPR001611 GO:0005515(InterPro)
Hepe02g0129 412 Gene3D Ribonuclease Inhibitor 225 344 IPR032675 -
Hepe02g0129 412 Gene3D Ribonuclease Inhibitor 58 224 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0129 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0129 Hepe-Chr2:1454145 Hepe03g0572 Hepe-Chr3:11211999 1.04e-34 dispersed
Hepe02g0129 Hepe-Chr2:1454145 Hepe05g1580 Hepe-Chr5:65390959 1.00e-37 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g277 . . . . . . . . . . . . . . Sed05g1943 . . Bhi05g01965 Tan02g0208 Cmetu01g0388 Lac12g0736 Hepe02g0129 . . . . . . . . . . . . Cone12ag1471 . . . Cme01g00299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi11g01698 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0745 . 56 228 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 5.1e-43 173.3
Hepe02g0129 . 55 381 Leucine-rich Repeat extension Gene Families AT1G62440 57.2 7.2e-37 152.9
Hepe08g2577 . 64 233 Leucine-rich Repeat extension Gene Families AT1G62440 65.9 3.6e-36 150.6
Hepe09g0745 . 16 411 Leucine-rich Repeat extension Gene Families AT4G13340 73.0 1.3e-67 255.0
Hepe08g2577 . 30 415 Leucine-rich Repeat extension Gene Families AT4G13340 73.1 1.1e-63 241.9
Hepe01g1724 . 16 218 Leucine-rich Repeat extension Gene Families AT4G13340 69.3 1.5e-39 161.8
Hepe03g0572 . 20 225 Leucine-rich Repeat extension Gene Families AT4G13340 55.3 2.2e-38 157.9
Hepe02g0129 . 54 382 Leucine-rich Repeat extension Gene Families AT4G13340 60.6 8.2e-38 156.0
Hepe05g1580 . 44 371 Leucine-rich Repeat extension Gene Families AT4G13340 65.3 2.0e-36 151.4
Hepe09g0745 . 19 410 Leucine-rich Repeat extension Gene Families AT3G24480 70.7 3.3e-72 269.6
Hepe08g2577 . 26 411 Leucine-rich Repeat extension Gene Families AT3G24480 71.1 7.2e-67 251.9
Hepe02g0129 . 54 382 Leucine-rich Repeat extension Gene Families AT3G24480 58.2 2.2e-39 160.6
Hepe01g1724 . 16 218 Leucine-rich Repeat extension Gene Families AT3G24480 64.1 3.7e-39 159.8
Hepe03g0572 . 24 225 Leucine-rich Repeat extension Gene Families AT3G24480 50.7 4.8e-39 159.5
Hepe05g1580 . 40 370 Leucine-rich Repeat extension Gene Families AT3G22800 68.4 8.1e-52 201.8
Hepe02g0129 . 54 381 Leucine-rich Repeat extension Gene Families AT3G22800 61.7 8.1e-44 175.3
Hepe09g0745 . 68 396 Leucine-rich Repeat extension Gene Families AT3G22800 61.0 1.3e-38 157.9
Hepe09g0745 . 42 400 Leucine-rich Repeat extension Gene Families AT5G25550 61.5 1.0e-40 164.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012968 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 28