Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0159 ATGGGTTGGAAGAGATCTTCGAGGAATTGCAATTTGAGGATCTGTGTGCAGGTTTTAGTTGGATTCGTGATCTGTGCAGCACAAGTTCTTTTCGGAATTACGAATCCAGGCGATTTTGCTGCTATCAGTAGCTTACATACCGCACTGGGACTCCCCAATCTTCCTGGATGGGGTATTGGGCAAGACCCATGTGGAGATGCATGGCAGGGTATCGTATGTAATGATTCAAACATCATTAAAATAGTTATTAATGCTGCTAATTTGGGAGGTGGACTGGGTGACAACTTGGGAATGTTCTCTTCAATCCAAACAATTGATTTTAGCAACAATAACATAGGGGGAAGTATTCCATCCAGTTTACCCGTTACCATGCAGAACCTTTTTCTTTCAGCTAATGAGTTCACTGGAAGCATTCCGAGTTCATTATCATCTTTAGTTCAACTGGCAGCCATGTCGGTGAATGATAACAAATTAAGTGGACAAATACCAGATTCCTTTGAAACCATTACTCAATTGATCAATTTTGACTTATCCAATAACAACTTGAGTGGGCCACTGCCTCCATCTGTAAGCAATTTATTGGCATTGACCACCCTGCATTTGCAGAACAATCAGCTATCAGGGACCCTTGATGTTCTACAAGACCTTCCACTAAAAGATTTGAATATAGAGAACAACCTTTTTTCTGGACCCATACCTGAGAAGGTCCTGAGTATCCCTAATTTTAGAAAGGATGGAAACCCATTTAATTCTTCTGTTTCTCCAACGCCTCCTCCTTCTGTATCTCCACCATCAAAGCCGGCACCAGCACCTACAGTTTCTGGAGCACCAGCACCGCCAGTTTCTGGAGCACCGCCATCTTCTCAACAAAAACCTAGGAAACAGGCTGATGGACCATCCGCACCTGAGGAATCCAGTACTGGAAAAAATAAGAAACATACTAAAAGGGTTGTTTTGATAACAATTGCAGTGGTATTGTCACTCATAATTTTGGTCTTGGCATGTGTGCTTTTTATGCCAAGGTGCAGAAGGAGAGCAGTTGATCGTATTTCCAAGCCACATCAGATAGGTGCTTATAGGGGTGAGAGAGAGAATGCTGGAAATGAGGGATCCATGCACCATACAATTGATCAGATACCTAAAGTTCCAAAAGAGGCAGTTGTAGGGCCGAAGCAGGAAACTCAAACAGAGGCTCAGAAGGTTCCAAAAGCTCATGAAGAGAGAGAGAGAAACATGCCAAGAATGAGCGCTATTCCAAAGAAGGATCATCATGAAGTAGATGTGAGCGCACTCGATGTCTATCTAATGCCTCCCCCTCCCCCACCACCTCCCCCTCCTCCACCACCTCCTGTTGAAGAGGTCACTGCAGTGCCCATTGTTCCAGCCGAAGTTCCACCCTTGAGGCCTCCCACCAAACATAGAGTTACCTCAACTTTTGCAAAATCTTTCACCATTGCATCCCTTCAGCAATATACAAACAGCTTTTCACAAGAGAATCTTCTAGGAGAAGGAATGCTGGGGAGTGTTTATCGGGCACAGCTCCCCAGTGGGAAGCTACTGGCCGTCAAGAAACTGGATAAAAGAGCATTCAGTCAGCAAAAGGATGATGAATTCCTTGAGTTAGTGAATAATATCGATAGAATCCGGCATGCTAATGTGGTAGAGCTCAGTGGTTACTGTGCAGAGCATGGTGAAAGGCTTCTTATCTATGAGTATTGCAGTGGTGGAACACTGCAGGATGCACTGCACTCAGACACAGAGTTCAGAAAGAATCTTTCTTGGAATGCCCGCATTAGAATGGCTCTTGGGGCTGCAAGAGCCTTGGAGTATCTGCATGAGGTCTGTCAGCCACCTGTTATTCATAGGAATTTCAAGTCCTCAAATGTCCTACTTGATGAAGATCTTTCAGTGCGTCTTTCAGAATGTGGTCTGGCTTCATTAATATCAAAAGGAGCTGTTAGTCAGCTATCAGGTCAGCTTCTAACAGCATATGGTTACGGAGCGCCAGAGTTTGAATCAGGAGTTTATACACTTGAGAGTGACGTTTACAGCTTCGGTGTGGTTATGCTGGAACTTCTAACTGGCCGGATGTCTTATGATAGAACAAGGACCCGGGGTGAGCAGTTTCTAGTCAGATGGGCGATTCCGCAGCTTCACGACATAGAGGCATTGACGAGCATGGTTGATCCTTCGCTCAATGGTCGATACCCTGCTAAATCCTTGTCATACTTTGCCGATGTCATATCAAAATGTGTTCAGTCGGAGCCTGAATTCCGGCCACCAATGTCAACGGTCGTTCAGGACTTGCTCAACATGATAAGGAGAGAACCACAAGGCAGTGGTTCAAGTGAAGATTGA 2358 44.83 MGWKRSSRNCNLRICVQVLVGFVICAAQVLFGITNPGDFAAISSLHTALGLPNLPGWGIGQDPCGDAWQGIVCNDSNIIKIVINAANLGGGLGDNLGMFSSIQTIDFSNNNIGGSIPSSLPVTMQNLFLSANEFTGSIPSSLSSLVQLAAMSVNDNKLSGQIPDSFETITQLINFDLSNNNLSGPLPPSVSNLLALTTLHLQNNQLSGTLDVLQDLPLKDLNIENNLFSGPIPEKVLSIPNFRKDGNPFNSSVSPTPPPSVSPPSKPAPAPTVSGAPAPPVSGAPPSSQQKPRKQADGPSAPEESSTGKNKKHTKRVVLITIAVVLSLIILVLACVLFMPRCRRRAVDRISKPHQIGAYRGERENAGNEGSMHHTIDQIPKVPKEAVVGPKQETQTEAQKVPKAHEERERNMPRMSAIPKKDHHEVDVSALDVYLMPPPPPPPPPPPPPPVEEVTAVPIVPAEVPPLRPPTKHRVTSTFAKSFTIASLQQYTNSFSQENLLGEGMLGSVYRAQLPSGKLLAVKKLDKRAFSQQKDDEFLELVNNIDRIRHANVVELSGYCAEHGERLLIYEYCSGGTLQDALHSDTEFRKNLSWNARIRMALGAARALEYLHEVCQPPVIHRNFKSSNVLLDEDLSVRLSECGLASLISKGAVSQLSGQLLTAYGYGAPEFESGVYTLESDVYSFGVVMLELLTGRMSYDRTRTRGEQFLVRWAIPQLHDIEALTSMVDPSLNGRYPAKSLSYFADVISKCVQSEPEFRPPMSTVVQDLLNMIRREPQGSGSSED 785
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1705438 1712729 + Hsped.02g01590.1 Hepe02g0159 561660

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0159 785 Pfam Leucine Rich Repeat 101 120 IPR001611 GO:0005515(InterPro)
Hepe02g0159 785 Pfam Leucine Rich Repeat 172 193 IPR001611 GO:0005515(InterPro)
Hepe02g0159 785 Pfam Leucine Rich Repeat 125 145 IPR001611 GO:0005515(InterPro)
Hepe02g0159 785 Gene3D Ribonuclease Inhibitor 40 256 IPR032675 -
Hepe02g0159 785 SUPERFAMILY Formin homology 2 domain (FH2 domain) 439 448 - -
Hepe02g0159 785 Gene3D Phosphorylase Kinase; domain 1 468 572 - -
Hepe02g0159 785 MobiDBLite consensus disorder prediction 287 305 - -
Hepe02g0159 785 SUPERFAMILY Protein kinase-like (PK-like) 470 769 IPR011009 -
Hepe02g0159 785 SUPERFAMILY L domain-like 51 241 - -
Hepe02g0159 785 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 573 783 - -
Hepe02g0159 785 MobiDBLite consensus disorder prediction 247 312 - -
Hepe02g0159 785 Gene3D Transferase(Phosphotransferase) domain 1 574 782 - -
Hepe02g0159 785 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 465 572 - -
Hepe02g0159 785 MobiDBLite consensus disorder prediction 252 286 - -
Hepe02g0159 785 PANTHER LEUCINE RICH REPEAT KINASE 2 73 771 IPR051420 -
Hepe02g0159 785 MobiDBLite consensus disorder prediction 389 411 - -
Hepe02g0159 785 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 35 260 - -
Hepe02g0159 785 Pfam Protein tyrosine and serine/threonine kinase 497 769 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g0159 785 ProSiteProfiles Protein kinase domain profile. 495 773 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0159 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0159 Hepe-Chr2:1705438 Hepe02g1584 Hepe-Chr2:21031314 3.02e-129 dispersed
Hepe02g0159 Hepe-Chr2:1705438 Hepe04g1828 Hepe-Chr4:73243272 8.37e-180 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe02g0159 . 34 783 Strubbelig Receptor Gene Family AT4G03390 61.7 3.8e-208 721.8
Hepe04g1828 . 29 752 Strubbelig Receptor Gene Family AT4G03390 55.1 8.7e-160 561.2
Hepe02g2146 . 22 616 Strubbelig Receptor Gene Family AT1G78980 52.0 3.1e-164 575.9
Hepe02g1584 . 30 715 Strubbelig Receptor Gene Family AT1G78980 52.2 7.1e-153 538.1
Hepe03g1378 . 18 702 Strubbelig Receptor Gene Family AT1G78980 51.3 6.9e-132 468.4
Hepe03g1378 . 18 697 Strubbelig Receptor Gene Family AT3G13065 50.1 4.3e-110 396.0
Hepe07g1580 . 389 682 Strubbelig Receptor Gene Family AT1G11130 53.7 2.1e-85 313.9
Hepe02g0159 . 34 783 Strubbelig Receptor Gene Family AT4G03390 61.7 3.8e-208 721.8
Hepe04g1828 . 29 752 Strubbelig Receptor Gene Family AT4G03390 55.1 8.7e-160 561.2
Hepe03g1378 . 18 697 Strubbelig Receptor Gene Family AT3G13065 50.1 4.3e-110 396.0
Hepe02g2146 . 22 616 Strubbelig Receptor Gene Family AT1G78980 52.0 3.1e-164 575.9
Hepe02g1584 . 30 715 Strubbelig Receptor Gene Family AT1G78980 52.2 7.1e-153 538.1
Hepe03g1378 . 18 702 Strubbelig Receptor Gene Family AT1G78980 51.3 6.9e-132 468.4
Hepe02g1584 . 11 715 Strubbelig Receptor Gene Family AT1G53730 60.9 7.4e-214 740.7
Hepe03g1378 . 12 710 Strubbelig Receptor Gene Family AT1G53730 61.4 1.8e-191 666.4
Hepe02g1584 . 13 710 Strubbelig Receptor Gene Family AT3G14350 51.5 1.2e-184 643.7
Hepe03g1378 . 21 714 Strubbelig Receptor Gene Family AT3G14350 53.3 8.5e-167 584.3
Hepe07g1580 . 150 712 Strubbelig Receptor Gene Family AT4G22130 64.0 4.8e-176 614.8
Hepe02g1584 . 394 722 Strubbelig Receptor Gene Family AT4G22130 62.8 1.1e-119 427.6
Hepe03g1378 . 403 716 Strubbelig Receptor Gene Family AT4G22130 64.9 1.9e-116 416.8
Hepe02g0159 . 480 775 Strubbelig Receptor Gene Family AT4G22130 61.3 6.2e-107 385.2
Hepe04g1828 . 439 752 Strubbelig Receptor Gene Family AT4G22130 56.2 6.8e-98 355.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003611 2 1 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 1 2 1 1 1 1 0 1 1 1 1 2 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72516 PF07714 PK_Tyr_Ser-Thr 3.50E-41 CL0016 Hepe PK