Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0166 ATGACATTTTTCTCCTTCTTCTCTAGAGCTTCAAGAGCTTTTCACGGCTCCCCTGCGTATTCAAAGCTTCTCGTCATCAGCACCCTCAGTAGCGGAGGTCTATTGGCATATGCAGATTCACAAACAGACGCTGGCAGTTTGATTGAGGAGTGCCCAAAAAAGAGAGTTCTGGTTCTTGGAACAGGATGGGCCGGTACCAGTTTCCTCAAGAATCTGGATGCTTCAAAATATGATGTTCAGGTTGTTTCGCCTCAGAATTATTTCTCATTTACTCCTTTATTGCCTAGTGTTACATGTGGAACAGTTGAAGCACGAAGCATTGTCGAACCCGTTCGAAACATCATGAAGAAGAGAAAAGGTGAAATTAAATTCTGGGAAGCTGAATGCACAAAAATTGATGCTGCAAACAAAAAGGTTTTCTGTCGGTCTAATGTCGAGAATAACTTGGCTGGAAATAGGGAGTTTGCTTTAGAATATGACTATTTGGTAATAGCAATGGGAGCACAAGTTAATACTTTTAATACTCCTGGTGTCAAGGAGAACTGCCATTTTCTCAAGGAAGTGGAAGATGCTCAGAAGATCCGCAAAAGTGTGATAGATTGTTTTGAAATGGCTGTGATTCCTAGTTTAAGTGAAGAAGAGCGAAGGAGAAATCTTCATTTCGTTATTGTTGGAGGGGGTCCCACTGGGATTGAATTTGCTGCAGAGCTTCATGACTTTGTTGAAGATGATTTAGTTAATTTATATCCCATGGTTAAAGATCTGGTGAAAATTTCAGTGATTCAATCAGGAGATCACATCTTAAATGCGTTTGATGAAAGAATTAGCTTGTTTGCCGAACAAAAATTCCAAAGAGATGGTATCGATGTGCACACAGGATGTCGAGTTGTCAGTGTATCTGATAAGGAAATTAAGATGAAGGTGAAATCAACGGGAGAAGGCTGTTCAATACCGCATGGACTAATTGTGTGGTCTACGGGCATCATGACTCGTCCTGTTGTGAAGAATTTCATGGAGCAGATTGGCCAGGGTAGTAGACGCATTCTAGCCACTGATGAATGGCTTCAAGTGAAGGGTGCTCAAAATGTGTATGCCATTGGTGATTGTGCTACAATTGACCAACGCAAAATTATGGAAGATATCGCCACCATATTTGAAGCTGCAGACAAAGATAGCTCTGGAACCTTGACAGTTAAAGAATTTCAAGATGTTTTAGATGATATCTTGATAAGGTATCCTCAAGTGGAAATATATTTGAAGAGCAAACAACTACGCAATGTAAGAGATCTATTGAAAGATTCTCAAGGACATGAGAATGAAGTAGATATTGAAGGATTTAAGTCAGCTCTTTCTCATGCTGACTCACAAATGAAAAGTCTGCCTGCTACTGCACAGGTTGCTGCCCAACAAGGTGAGTATCTTTGCAGGTGCTTCAACCGTAGGGAGCACTGCACAGAGAATCCTGAAGGCCCTCAACGTTTTAAGAGTTCTGGACGCCATTCGTTTCTTCCCTTTCGGTACAAGCACTTAGGACAGTTCGCTCCTTTAGGAGGAGAACAAGCTGCTGCAGAACTCCCTGGAGACTGGGTTTCCATGGGTCGCAGCACTCAGTGGCTCTGGTATTCTGTATATGCAAGCAAGCAGGTCAGCTGGCGCACAAGGTATCTAGTGGTATCAGACTGGACAAGAAAGTTTATATTTGGTAGAGACTCGAGCCGCATCTGA 1725 42.26 MTFFSFFSRASRAFHGSPAYSKLLVISTLSSGGLLAYADSQTDAGSLIEECPKKRVLVLGTGWAGTSFLKNLDASKYDVQVVSPQNYFSFTPLLPSVTCGTVEARSIVEPVRNIMKKRKGEIKFWEAECTKIDAANKKVFCRSNVENNLAGNREFALEYDYLVIAMGAQVNTFNTPGVKENCHFLKEVEDAQKIRKSVIDCFEMAVIPSLSEEERRRNLHFVIVGGGPTGIEFAAELHDFVEDDLVNLYPMVKDLVKISVIQSGDHILNAFDERISLFAEQKFQRDGIDVHTGCRVVSVSDKEIKMKVKSTGEGCSIPHGLIVWSTGIMTRPVVKNFMEQIGQGSRRILATDEWLQVKGAQNVYAIGDCATIDQRKIMEDIATIFEAADKDSSGTLTVKEFQDVLDDILIRYPQVEIYLKSKQLRNVRDLLKDSQGHENEVDIEGFKSALSHADSQMKSLPATAQVAAQQGEYLCRCFNRREHCTENPEGPQRFKSSGRHSFLPFRYKHLGQFAPLGGEQAAAELPGDWVSMGRSTQWLWYSVYASKQVSWRTRYLVVSDWTRKFIFGRDSSRI 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 1760893 1765837 + Hsped.02g01660.1 Hepe02g0166 561667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0166 574 ProSitePatterns EF-hand calcium-binding domain. 389 401 IPR018247 -
Hepe02g0166 574 SUPERFAMILY FAD/NAD(P)-binding domain 219 373 IPR036188 -
Hepe02g0166 574 Pfam NDH2 C-terminal domain 509 570 IPR054585 -
Hepe02g0166 574 PANTHER NADH DEHYDROGENASE 44 574 IPR045024 GO:0003954(InterPro)|GO:0006116(InterPro)
Hepe02g0166 574 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 422 573 - -
Hepe02g0166 574 SUPERFAMILY EF-hand 373 460 IPR011992 -
Hepe02g0166 574 ProSiteProfiles EF-hand calcium-binding domain profile. 376 411 IPR002048 GO:0005509(InterPro)
Hepe02g0166 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 159 177 - -
Hepe02g0166 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 56 75 - -
Hepe02g0166 574 PRINTS FAD-dependent pyridine nucleotide reductase signature 220 238 - -
Hepe02g0166 574 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 45 405 - -
Hepe02g0166 574 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 378 IPR023753 GO:0016491(InterPro)
Hepe02g0166 574 Gene3D - 48 403 - -
Hepe02g0166 574 Gene3D - 421 573 - -
Hepe02g0166 574 SUPERFAMILY FAD/NAD(P)-binding domain 53 272 IPR036188 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0166 Hepe-Chr2:1760893 Hepe08g0722 Hepe-Chr8:6512949 8.84e-65 dispersed
Hepe04g0128 Hepe-Chr4:36067322 Hepe02g0166 Hepe-Chr2:1760893 3.31e-13 transposed
Hepe02g0166 Hepe-Chr2:1760893 Hepe04g1825 Hepe-Chr4:73188383 6.97e-68 wgd
Hepe02g0166 Hepe-Chr2:1760893 Hepe07g1961 Hepe-Chr7:63504837 1.36e-289 wgd
Hepe02g0166 Hepe-Chr2:1760893 Hepe08g0511 Hepe-Chr8:4483458 4.61e-276 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0166 K03885 - csv:101203130 1062.75