Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0216 ATGAGAAAGTTTGCTGCTCTGCCGCTGCTGCGTTTTGTGATATGGCTGTTTCTGACTGGTCTGATCTGGTGCCAAAAACCTGCTGTCGTAAATATTGGTGCGGTTTTTACTTTCAATTCAGTCATTGGTAGAGCAGCAAAGCCGGCGATGCAAGCAGCAATCTCCGACATTAACGGGGACCCCAACATTTTGATTGGGACAAAGCTGAACTTCCTGATGGAGGACTCTAATTGTAGCGGCTTCCTGGGCTCTGTTGAAGCTTTGCAGGTACTTGAGAAAGAGATTGTAGCCATCATTGGCCCACAATCCTCTGTGTTGGCTCATGTGATTTCTCATATAGCTAATGGTCTACAAATTCCTCAAGTATCATATGCCGCCACTGATCCAACATTATCCACTCTGCAACTCCCTTTTTTCCTCCGTACCACTTTAAGTGACTCCTACCAAATGGCTGCCATGGCTGACTTGATTGATTATTATGGCTGGAAAGAAGTCATCGCTATATTTCTAGATGATGATTATGGCAGAAATGGGATATCTTCTTTGGGTGATGAACTTCAGAAGAAAATGTCTCGTATTTCTCATGAACTCCCCTTGCCTTCTCTGCTTAATCTTACTAAGATCACAGAGATACTTAATAACTCTAAATTGCTCGGTCCTCGTGTTTATGTTGTACACGTCGGCCCTGATCCCCAATTAAGAATCTTCACCATCGCCCATAAACTTGGTATGCTTACCAAAAACTACGTTTGGTTTGCAACTGATTGGCTTGCTACAACTCTAGATTCCTTTTCACTAACAACCAATAATCGTTCTTCACTTGATTTACTTAATGGGGTAGTGGGGCTACGCCCTCATACTCCAGAGTCTAAAGGAAAGAGGGATTTGTTGGATCGGTTGGCTAATTCTGTATTGAATGTTTATGGACTCTACGCTTATGATTCAGTATGGATTGTTGCCAGAGCAGTCGATAAGTTTCTCAAAGAAAATGGTAATATCACTTTTTCATCCACAGGGAAAGTATTTGGCTCTGATGAAAGTGGAATTCAGCTGGGAAAGCTTAAAATGTTTGATGGAGGAAGTGATTTGCTTAGGATTATTATGCAAACGAATTACACTGGTTTAAGTGGGCGAATTCAGTTTAGTGAAGACAGAAATATTATCAATGGTAGCTATGATGTGATTAATATTGACCAAAAGGAAATTCGTAAGGTGGGTTATTGGTCTAATTACTCAGGATTCTCGATTTCACCTCCTGAAGCTTTGACATTGAAACAAGAGGATTATTCCCACTTAGATCAGAAACTTGGTAATGTGGTTTGGCCTGGTGGAATGACAGAAATACCACGCGGTTGGGTGATTGCAGACGCTGGAAAACCTCTGAGAATTGCGTTCCCGAAAAGAGAAAGCTTTGTTGATTTTGTTACTCAATTGAACAACACCGATGCAGTTCGAGGATACGTTATTGATATTTTCAAAGAAGCACTCAAGTTTGTTCCTTATGAGGTTCCTTACAAATTTGTGGCTTTTGGGGATGGTCGAGTCAATCCCAGTTATGATGAACTTGTTCAGTCGGTTGCTGATAATGTGTTTGATGCAGCTGTTGGGGACATTGCTATTGTTACGAACCGGACAAAGATTGTTGATTTTTCTCAACCATTTACAACTACTGGGCTAATCATAGTTGCTCCGGTTGAAGATTCAAAATCAAGTGCTTGGGTGTTTCTTAAACCATTTACAGTGGAGATGTGGTGTGCAACAGCGGGTTCTTTTGTGGTTATTGGGATTGTTATTTGGATGCTTGAACACCGAATCAACGACCATTTTCGAGGTCCTCCAAAGAGGCAAATTATCACAATGTGTCTGTTCAGCATTTCAACTCTATTCAAGGCAAATCAAGAAGCAACAATTAGCCCCCTTTCACGACTGGTGATGTTGGTGTGGCTGTTCTTATTATTGGTAATAACGTCAAGCTACACAGCAAGTTTGACATCAATCCTTACAATTCAGAAACTTTGGTCGCCAATACGTGGAATTGATGACTTGATTGCAAGTAACTCCCCGATAGGATTTCAGGTAGGATCATTTGCTTACGACTATCTGACACAGAGCCTTTTCATACCACGTTCCAGATTAGTGACACTGAACTCCCCTGAAGATTACGAGATAGCACTGCGCCGAGGTCCAAATGGAGGCGGTGTTGCGGCTATCATTGATGAACTTCCCTATGTGGAGTTATTTCTGTCTAAGACTAAAGAATTTGGAATGGTTGGACAACCTTTTACCAGGAGCGGATGGGGATTTGCTTTTCAGCGAGAATCTCGACTCGCAGTTGATATATCAACTGCAATTTTGAGACTTTCTGAGAGCGGAAAGCTTCAAGAGATACACGACACCTGGTTCTGTAAGCTAGGTTGTCCCGGGGAGCGAGGAGGAAAGTCGGAGCCAGACCAACTTAACTTGATCAGTTTCTGGGGTTTGTATTTGCTTTGTGGAATCATTTCCCTAGCTGCACTTTTCGTGTTTCTTCTAAGACTAATTCGCCAGTACATCCGCTACCAACGACATCATCGTCGTGCAGAGGAACTTACACCATCCCCCGTTTCATCCAACACCAGCTGTACTCAGACCATTCAAAGCTTTGTAGGCTTTATTGATGAGAAGGAAGAAGCCATCAAAAGCTTCTTTCGAGCATCATCACATTCACAGGGCGCTCAAAATGGGGACCGACTCCAGAAACATTCAGAGGTACAGCTGGGGAGCTCCTCGGGTATGAATCGATAG 2784 42.6 MRKFAALPLLRFVIWLFLTGLIWCQKPAVVNIGAVFTFNSVIGRAAKPAMQAAISDINGDPNILIGTKLNFLMEDSNCSGFLGSVEALQVLEKEIVAIIGPQSSVLAHVISHIANGLQIPQVSYAATDPTLSTLQLPFFLRTTLSDSYQMAAMADLIDYYGWKEVIAIFLDDDYGRNGISSLGDELQKKMSRISHELPLPSLLNLTKITEILNNSKLLGPRVYVVHVGPDPQLRIFTIAHKLGMLTKNYVWFATDWLATTLDSFSLTTNNRSSLDLLNGVVGLRPHTPESKGKRDLLDRLANSVLNVYGLYAYDSVWIVARAVDKFLKENGNITFSSTGKVFGSDESGIQLGKLKMFDGGSDLLRIIMQTNYTGLSGRIQFSEDRNIINGSYDVINIDQKEIRKVGYWSNYSGFSISPPEALTLKQEDYSHLDQKLGNVVWPGGMTEIPRGWVIADAGKPLRIAFPKRESFVDFVTQLNNTDAVRGYVIDIFKEALKFVPYEVPYKFVAFGDGRVNPSYDELVQSVADNVFDAAVGDIAIVTNRTKIVDFSQPFTTTGLIIVAPVEDSKSSAWVFLKPFTVEMWCATAGSFVVIGIVIWMLEHRINDHFRGPPKRQIITMCLFSISTLFKANQEATISPLSRLVMLVWLFLLLVITSSYTASLTSILTIQKLWSPIRGIDDLIASNSPIGFQVGSFAYDYLTQSLFIPRSRLVTLNSPEDYEIALRRGPNGGGVAAIIDELPYVELFLSKTKEFGMVGQPFTRSGWGFAFQRESRLAVDISTAILRLSESGKLQEIHDTWFCKLGCPGERGGKSEPDQLNLISFWGLYLLCGIISLAALFVFLLRLIRQYIRYQRHHRRAEELTPSPVSSNTSCTQTIQSFVGFIDEKEEAIKSFFRASSHSQGAQNGDRLQKHSEVQLGSSSGMNR 927
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2151152 2157397 - Hsped.02g02160.1 Hepe02g0216 561717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0216 927 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 103 131 - -
Hepe02g0216 927 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 234 257 - -
Hepe02g0216 927 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 43 59 - -
Hepe02g0216 927 Pfam Receptor family ligand binding region 46 398 IPR001828 -
Hepe02g0216 927 FunFam Glutamate receptor 698 805 - -
Hepe02g0216 927 CDD PBP1_GABAb_receptor_plant 31 418 IPR044440 -
Hepe02g0216 927 FunFam Glutamate receptor 456 572 - -
Hepe02g0216 927 Pfam Ligand-gated ion channel 581 833 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe02g0216 927 Pfam Ligated ion channel L-glutamate- and glycine-binding site 475 564 IPR019594 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe02g0216 927 Gene3D - 572 704 - -
Hepe02g0216 927 Gene3D - 49 389 - -
Hepe02g0216 927 FunFam Glutamate receptor 145 315 - -
Hepe02g0216 927 SUPERFAMILY Periplasmic binding protein-like I 24 453 IPR028082 -
Hepe02g0216 927 Gene3D - 145 414 - -
Hepe02g0216 927 FunFam Glutamate receptor 572 702 - -
Hepe02g0216 927 Gene3D - 454 571 - -
Hepe02g0216 927 SMART GluR_14 460 803 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Hepe02g0216 927 MobiDBLite consensus disorder prediction 903 927 - -
Hepe02g0216 927 PIRSF IGluLR_plant 1 926 IPR017103 -
Hepe02g0216 927 Gene3D - 749 808 - -
Hepe02g0216 927 SUPERFAMILY Periplasmic binding protein-like II 439 801 - -
Hepe02g0216 927 CDD GluR_Plant 459 801 - -
Hepe02g0216 927 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 30 880 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0216 Hepe-Chr2:2151152 Hepe08g0470 Hepe-Chr8:4123596 7.38e-315 dispersed
Hepe02g0216 Hepe-Chr2:2151152 Hepe08g0469 Hepe-Chr8:4093183 0.0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0216 K05387 - csv:101203158 1473.76