Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0232 ATGGACGCCGCCCCTTCCCCTTCCCCCCCTCCCTCCTCCGCCACGCTGCACTTTCCGGTCAACCTCAATTCCACCCTCCACGAATCTCCTCCTCCTCCTCCACCCCCACCACCTCCTCCTCCCTCCTTCGACGGCCACCGCGCCTTCTTCGATGAGATGAACTTCTTCGCCGCCGATGATAAATCCCGCGTTCTTTCTGCCGCTGACTCCAAACCACCTGCCTCCGACAACCTCGACTTTAACGTAAATACTGGGTTGAATCTATTGACGACGAATTCGAGTAGTGATCAATCCATGGTGGATGAAGGAAATTCACCAAACCCAGATGACAAAAGAGCCAAAAACGAGAGAGTAGTTCTTCAAGCTGAATTGGAGAGAATAAACACAGAGAATCAACGATTAAAGGATATGTTAAATCAAGTGACGAGCAATTACCAAGCGTTGCAGATGCACTTCACAACACTAATTCAAAACCAAAAGGCAGCGGATGCCGGCGACCCAATTGACGAAAAGCCCGGTGGCGGTGGCCAAGAAAAGATCCGGCACGGCGGCGGAGGGAATAATAGTAATAAATTGGTGCCGAGGCAATTTATGGATCTCGGATTGGCCACGAATACGGAGACCGATGAGCCGTCGATTTCGTCGTCGGATGGGAGGAGCGGTGAGCGGTCGCGATCGCCGGGAGCCACCGGAGAAGTGGCATCGTCGAAACGGCAGAGCCCAGATCAAAGTTCGAATTGGGGTTCGAATAAAGTCCCTAAATTCAGTAGTTCTTCTTCTTCGGGTAAAGATGTGGATCAAACTGAAGCTACCATGAGAAAGGCTAGAGTCTCCGTTCGAGCCAGATCGGAAGCACCCATGATCACAGATGGATGCCAATGGAGAAAATACGGACAAAAAATGGCGAAGGGAAACCCTTGTCCTCGAGCTTACTACCGGTGCACCATGGCCGCCGGCTGCCCTGTTCGGAAACAAGTACAAAGATGTGCAGAAGACAAAACAATTCTGATAACAACCTACGAAGGAAACCACAACCACCCATTGCCACCGGCCGCCATAGCAATGGCATCGACAACATCATCGGCGGCCAGAATGCTTCTTTCCGGATCCATGTCAAGTGCAGATGGTTTAATGAACTCTAACTTTTTAGCAAGAACCCTATTGCCATGTTCTTCAAGCATGGCTACAATCTCAGCCTCAGCTCCATTTCCCACTGTCACATTAGACCTAACACAAAACCCTAATTCTTTATTCCAACGCCCCGCCGCCGGACATTTCCCCATCCCGTTCGGGGCTGCTCCGCCCCAAAGCTTCCCACAGATCTTCGGACATCCATTATACAACCAATCAAAATTCTCCGGCCTCCAAATGTCAAAGGACATGGAAGCGCCACCGCCTCCGCCGCAAAATCCATTGGCCGACACATTGAGCGCGGCGAGTGCTGCGATCGCTTCCGACCCGAATTTCATTGCGGCATTGGCGACGGCGATGACATCGTTAATCGGCGGATCTCATCATCAGAAGGAGAATGGTAATGGCAGTAATAATGTCGATAACAATACAAGTAGCAACTCCCAACAGTAA 1584 51.07 MDAAPSPSPPPSSATLHFPVNLNSTLHESPPPPPPPPPPPPSFDGHRAFFDEMNFFAADDKSRVLSAADSKPPASDNLDFNVNTGLNLLTTNSSSDQSMVDEGNSPNPDDKRAKNERVVLQAELERINTENQRLKDMLNQVTSNYQALQMHFTTLIQNQKAADAGDPIDEKPGGGGQEKIRHGGGGNNSNKLVPRQFMDLGLATNTETDEPSISSSDGRSGERSRSPGATGEVASSKRQSPDQSSNWGSNKVPKFSSSSSSGKDVDQTEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDKTILITTYEGNHNHPLPPAAIAMASTTSSAARMLLSGSMSSADGLMNSNFLARTLLPCSSSMATISASAPFPTVTLDLTQNPNSLFQRPAAGHFPIPFGAAPPQSFPQIFGHPLYNQSKFSGLQMSKDMEAPPPPPQNPLADTLSAASAAIASDPNFIAALATAMTSLIGGSHHQKENGNGSNNVDNNTSSNSQQ 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2368024 2371657 - Hsped.02g02320.1 Hepe02g0232 561733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0232 527 Gene3D WRKY domain 273 350 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0232 527 MobiDBLite consensus disorder prediction 26 44 - -
Hepe02g0232 527 MobiDBLite consensus disorder prediction 89 104 - -
Hepe02g0232 527 MobiDBLite consensus disorder prediction 503 527 - -
Hepe02g0232 527 MobiDBLite consensus disorder prediction 1 48 - -
Hepe02g0232 527 SMART WRKY_cls 288 348 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0232 527 Pfam WRKY DNA -binding domain 290 347 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0232 527 MobiDBLite consensus disorder prediction 89 112 - -
Hepe02g0232 527 Coils Coil 110 151 - -
Hepe02g0232 527 FunFam probable WRKY transcription factor 31 273 350 - -
Hepe02g0232 527 MobiDBLite consensus disorder prediction 201 266 - -
Hepe02g0232 527 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 98 508 IPR044810 GO:0003700(InterPro)
Hepe02g0232 527 MobiDBLite consensus disorder prediction 161 282 - -
Hepe02g0232 527 ProSiteProfiles WRKY domain profile. 283 349 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Hepe02g0232 527 SUPERFAMILY Formin homology 2 domain (FH2 domain) 30 40 - -
Hepe02g0232 527 SUPERFAMILY WRKY DNA-binding domain 281 349 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0232 Hepe-Chr2:2368024 Hepe09g0135 Hepe-Chr9:1069494 6.28e-53 dispersed
Hepe02g0232 Hepe-Chr2:2368024 Hepe04g1747 Hepe-Chr4:72500171 1.02e-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54941 PF03106 WRKY 2.40E-24 CL0274 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0232 - - - 0.0