Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0240 ATGATCCCTCCTCGATTAGGGTTTTTGTTGTTGGTTTTGATCTCTGTTCTTCTGGGTGCTGATTCAAAGTGTCCTAGAACATGCGATGTAGCTTTAGGTTCGTATTTCGTTTGGCCGGACAGCAATTTGACTTTCATCGCTCAAATGTTTCAGTTGCAGTCCCCTGATATCATCGTCAGCTACAACCGAGACAAAATTCCCAACAAAGACAGTGTTACTAGCGGCATCAGAATCAACGTTCCGTTCTCCTGTGGCTGTATTAGCGATTCGTTTCTGGGTCATACGTTTCAGTACACGATTAACAATGGAAATACTTACACTGAAATTGCCTCCAAATTCTATTCGGGCATGACTACGGTGGACATGTTACAGAACTTCAATAGTTTTAATGCTAATAATCTTCCTCCAAATGGGATTTTGAATGTTGTGGTGAAATGCTCCTGTGGGGATCCTGATGTTTCCAAGACTTACGGGTTGTTCGTCACTTACCCAATTCGATCTGATGATAGTTGGGATAATTTGCAAAGAGATACCAATGTCAGCTCAACTTTGCTGCAGAATTACAATCAGGGTGTGAATTTCAGTGCAGGAAATTTGATCTTTATTCCAGGCAGAGATCAAAGTGGCAACTATCCACCTCTGAATATAAGCACAGGAGTTGCAGGTGGAGCCATTGCAGGCATAATTATAGGCGCAGTACTTGGGGTTCTATTTGTAGCAGGCGTCATTTACATTGTCATTCGGAGGAGGAAGTCGAAACGTTCTAAATTGCTGGCGTTCTCCCAAGATTTATCTTCTCAAGACGGGCGTGCTCTTGTCCCTGGAAGTTCGTTAGATAAATCTACCGAATCAAATGGCCAAGGTGGCGGTGGTATAGCTTCCATTACGGGTATTACTGTGGACAAATCAGTGGATTTCTCATATGAAGAACTTGCCAAGGCCACCGACAACTTTAGCTTGGCTAACAAAATCGGGGAAGGTGGTTTTGGATCGGTTTACTATGCAGAACTCAGAGGAGAGAAAGCTGCAATAAAGAAGATGGATATGCAAGCTACAAGGGAGTTCCTTGCGGAGATTAAGGTTCTGACACGCGTTCACCACTTGAACCTGGTGCGCTTGATAGGATATTGTGTTGAGAATTCTCTATTCCTAGTCTATGAGTTCATTGAGAATGGCAACTTAAGCGAACATTTACGTGGCACAGATCGGAATCCATTGCCATGGCCTTCTAGGGTCCAAATAGCCCTTGATTCAGCCCGAGGCCTGGAGTATATCCATGAGCACACTGTTCCTGTTTATATTCATCGTGATATTAAATCAGCCAACATATTGATTGACAAGAACTTTCATGGAAAGGTTGCAGACTTTGGATTGACCAAGTTGACTGAAGTTGGAAATTCTTCACTTCCTACTCGTCTTGTGGGCACATTTGGATATATGCCACCCGAATATGCGCAATATGGTGATGTTTCTCCGAAGATCGATGTATATGCTTTCGGCGTTGTTCTTTATGAGCTTATTTCAGCCAAGGAAGCTGTGGTCAAGACAAACAGAGCCAGCGCAATAAATGAATCGAAAGGCCTCGTTGCTTTGTTTGAAGATGTCCTGAATCAACCCGACGCAAAAGAGAACCTTCACAATCTAGTCGATCGGAGACTGGAAGAGAACTACCCTCTCGATTCGGTTTTCAAGATGGCTCAGCTTGCCAAGGCATGCACACATGAGAATCCACAGCTACGCCCAAGCATGAGATCCATTGTGGTTGCTCTCATGACACTTTCTTCTGCAACAGAGGATTGGGACGTCGGCTCTTTCTACGAAAACCAAGCTCTCGTCAACTTGATGTCGGGAAGGTAG 1857 44.05 MIPPRLGFLLLVLISVLLGADSKCPRTCDVALGSYFVWPDSNLTFIAQMFQLQSPDIIVSYNRDKIPNKDSVTSGIRINVPFSCGCISDSFLGHTFQYTINNGNTYTEIASKFYSGMTTVDMLQNFNSFNANNLPPNGILNVVVKCSCGDPDVSKTYGLFVTYPIRSDDSWDNLQRDTNVSSTLLQNYNQGVNFSAGNLIFIPGRDQSGNYPPLNISTGVAGGAIAGIIIGAVLGVLFVAGVIYIVIRRRKSKRSKLLAFSQDLSSQDGRALVPGSSLDKSTESNGQGGGGIASITGITVDKSVDFSYEELAKATDNFSLANKIGEGGFGSVYYAELRGEKAAIKKMDMQATREFLAEIKVLTRVHHLNLVRLIGYCVENSLFLVYEFIENGNLSEHLRGTDRNPLPWPSRVQIALDSARGLEYIHEHTVPVYIHRDIKSANILIDKNFHGKVADFGLTKLTEVGNSSLPTRLVGTFGYMPPEYAQYGDVSPKIDVYAFGVVLYELISAKEAVVKTNRASAINESKGLVALFEDVLNQPDAKENLHNLVDRRLEENYPLDSVFKMAQLAKACTHENPQLRPSMRSIVVALMTLSSATEDWDVGSFYENQALVNLMSGR 618
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2426213 2430377 - Hsped.02g02400.1 Hepe02g0240 561741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0240 618 ProSiteProfiles Protein kinase domain profile. 318 593 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g0240 618 FunFam LysM receptor kinase 2 297 388 - -
Hepe02g0240 618 CDD STKc_IRAK 324 587 - -
Hepe02g0240 618 ProSitePatterns Protein kinases ATP-binding region signature. 324 346 IPR017441 GO:0005524(InterPro)
Hepe02g0240 618 Gene3D Phosphorylase Kinase; domain 1 304 388 - -
Hepe02g0240 618 Pfam Protein tyrosine and serine/threonine kinase 320 589 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g0240 618 SUPERFAMILY Protein kinase-like (PK-like) 301 590 IPR011009 -
Hepe02g0240 618 SMART serkin_6 318 592 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Hepe02g0240 618 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 9 617 IPR044812 GO:0019199(InterPro)|GO:0045087(InterPro)
Hepe02g0240 618 Gene3D Transferase(Phosphotransferase) domain 1 389 609 - -
Hepe02g0240 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Hepe02g0240 618 FunFam PTI1-like tyrosine-protein kinase 3 389 604 - -
Hepe02g0240 618 MobiDBLite consensus disorder prediction 268 290 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0240 Hepe-Chr2:2426213 Hepe10g1608 Hepe-Chr10:52799028 6.99e-88 dispersed
Hepe02g0240 Hepe-Chr2:2426213 Hepe02g3246 Hepe-Chr2:82026244 2.65e-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
72520 PF07714 PK_Tyr_Ser-Thr 1.80E-46 CL0016 Hepe PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0240 K13429 - csv:101203576 1036.17