Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0249 ATGGAGCAGCAGCCAGGATTTGGGGACAACAACAATAATCATATCAACACTCCTCTTTCTTCTTCACCTATTATCATCATCAATTCTACTTTGGATCACAACAACAACAATAACAAGATGTTCTTGCCTTTCTCTAATTGGTCTTCTTCTTCTTCTTCTACCCAATCTCAACCCAATCTCAACCATCATAATCTTCATAACAACTCCACTTCCACAGCTCAAATTATGGCTCATCCTCTCTTCCCCCGCCTCTTGGCCGCCTACGCCAACTGCCACAAGGTGGGTGCGCCGCCGGAAGTGGTGGCAAGGCTAGAGCAGGCGTGCGCGGTGGCGGCCGGAAGCTGTAGGACGGCGGCACGTGGGGATGATCCAGCGTTGGATCAGTTCATGGAGGCTTATTGTGAGATGTTGACCAAATACGAACAAGAGTTGACCAAGCCTTTCAAAGAAGCAATGCTTTTCTTCTCAAGAATTGAGTCTCAGCTCAAATCCATGGCAGTTTCTTCTTCTACTTCTGATGGTTGTGAGTTGGTCGGGCAAAACGAGTGTTCAAAGGAGATCGAGGTCGATATGAACGAAAACTACATTGACCCTCAAGCTGAAGAGAAGGAACTGAAAGGCCAGCTTCTTAGAAAATACAGTGGATACCTGGGCAGCCTAAAGCAAGAGTTTCTGAAGAAGAAGAAGAATGGAAAGTTGCCGAAAGAAGCCCGACAACAGCTGCTCGATTGGTGGAGTAGACACTACAAATGGCCATATCCCTCGGAGTCGCAAAAGGTGGCGCTGGCGGAGTCGACGGGGCTGGACTTGAAGCAGATAAATAACTGGTTCATCAACCAAAGAAAGCGGCATTGGAAGCCATCAGAGGATATGCAGTTTGTGGTGATGGATGCTGCTCATCCACACTACTATTTGGACAATGTCATCTGCACCAATCCCTTCTCTATGGACTGTTCTTCCACTCTTTTCTGA 972 47.33 MEQQPGFGDNNNNHINTPLSSSPIIIINSTLDHNNNNNKMFLPFSNWSSSSSSTQSQPNLNHHNLHNNSTSTAQIMAHPLFPRLLAAYANCHKVGAPPEVVARLEQACAVAAGSCRTAARGDDPALDQFMEAYCEMLTKYEQELTKPFKEAMLFFSRIESQLKSMAVSSSTSDGCELVGQNECSKEIEVDMNENYIDPQAEEKELKGQLLRKYSGYLGSLKQEFLKKKKNGKLPKEARQQLLDWWSRHYKWPYPSESQKVALAESTGLDLKQINNWFINQRKRHWKPSEDMQFVVMDAAHPHYYLDNVICTNPFSMDCSSTLF 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2487268 2491068 - Hsped.02g02490.1 Hepe02g0249 561750
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0249 323 ProSiteProfiles 'Homeobox' domain profile. 224 287 IPR001356 GO:0003677(InterPro)
Hepe02g0249 323 ProSitePatterns 'Homeobox' domain signature. 262 285 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Hepe02g0249 323 ProSiteProfiles ELK domain profile. 204 224 IPR005539 GO:0003677(InterPro)
Hepe02g0249 323 FunFam Homeobox protein knotted-1-like 2 229 291 - -
Hepe02g0249 323 Pfam KNOX1 domain 73 109 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe02g0249 323 SMART HOX_1 226 291 IPR001356 GO:0003677(InterPro)
Hepe02g0249 323 CDD homeodomain 236 288 IPR001356 GO:0003677(InterPro)
Hepe02g0249 323 Pfam ELK domain 204 225 IPR005539 GO:0003677(InterPro)
Hepe02g0249 323 Gene3D - 229 291 - -
Hepe02g0249 323 SMART KNOX2_2 116 167 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe02g0249 323 SMART ELK_2 204 225 IPR005539 GO:0003677(InterPro)
Hepe02g0249 323 Pfam Homeobox KN domain 244 283 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Hepe02g0249 323 SUPERFAMILY Homeodomain-like 226 301 IPR009057 -
Hepe02g0249 323 SMART KNOX1_2 69 113 IPR005540 GO:0003677(InterPro)|GO:0005634(InterPro)
Hepe02g0249 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 67 294 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Hepe02g0249 323 Pfam KNOX2 domain 121 165 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0249 Hepe-Chr2:2487268 Hepe08g1369 Hepe-Chr8:16039618 7.83e-76 dispersed
Hepe02g0249 Hepe-Chr2:2487268 Hepe04g1740 Hepe-Chr4:72434067 2.98e-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54944 PF03791 KNOX2 6.40E-22 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0249 - - - 0.0