Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Hepe02g0263 | ATGTCTGAAGAGCAAGCAATTTCAAATGCTTTCATTTGCAGCATCCCATCACTTGGATCCATCAACCCTCCCAAGAAGAAGAGAAATCTCCCTGGAAATCCAGATCCTGAAGCGGAAGTTGTAGCGTTGTCGCCGAAGACCCTAATGGCGACGAACCGATTCTTGTGCGAGATATGTGGGAAGGGTTTTCAAAGGGATCAAAACCTACAGCTGCATAGGAGAGGACACAATCTTCCATGGAAGCTGAAGCAAAGAAGCAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTCCATCACCATCCTTCAAGGGCTCTTGGAGACCTCACAGGGATTAAAAAGCACTTTTGCAGGAAGCACGGCGAGAAGAAGTGGAAATGTGAGAAATGCTCCAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGCACCAAAGAGTATAAATGTGACTGTGGAACTCCATTTTCAAGGAGAGATAGCTATGTAACTCACAGAGCATACTGTGTGGCATTAGCAGAAGAAACAGCAAGACTAAATGCAGCATCAACCATGCCCAACAACAACAACAACAACAATTCAATAGCAGCCACAGGTGATCACAACAACATCAACATCAACAACTACCATTTCCTTAAGCCCACCACCAATAATCCTCAACAATATTTCCCCTCCTCAAACTTTTTCAGACCAGATCATGAAATTACTTCCCAAATGTTCCTCAATAACAACAACAACATTAATAATCTCACACCCACATTAGGATTCCCTTTTTGGATGGCCCAATTAGGATCAGCTGCTGCAAATAACTCCCACCAAATCAATAATCTCCAAGACAACAACAATTTCCATCACCCATTTGCACAACCAACAACAACAACAACAAAAACAAGCTCTCTTGAGCATTCAGTTCCTTCCTTGTACAGCAATGAGGAACAACAATCCCATCAAGCTATGGCATCATCAGCCAACATGTCAGCCACTGTTTTGCTGCAAAAGGCTGCACAAATTGGAGTCACAAGCTCCACAGCAACAACAACAGACCCATCATTAATGATGGGAAGGGCTTTGTTTTCAGGGCTTTATGGCTCAATAAACTCAAACATTATTCCTAGTTTTTGCAGCAGCCTTGAAAATGGTGGAGATCATCAAGACTCTGCTGTCAGTAATAATTTGGTGCAAATGTACCCTGCAGCTAAGAGAATTAGGCACTCAGTTAGTGAAGAAAGTGTCACTGGTGGAGAAGGAGAGACAAGGGATTTCTTGGGTGTGGGCATGCACACCCTATGTCATCCATCAGCAGTCAATGGATGGATCTGA | 1347 | 43.28 | MSEEQAISNAFICSIPSLGSINPPKKKRNLPGNPDPEAEVVALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCVALAEETARLNAASTMPNNNNNNNSIAATGDHNNININNYHFLKPTTNNPQQYFPSSNFFRPDHEITSQMFLNNNNNINNLTPTLGFPFWMAQLGSAAANNSHQINNLQDNNNFHHPFAQPTTTTTKTSSLEHSVPSLYSNEEQQSHQAMASSANMSATVLLQKAAQIGVTSSTATTTDPSLMMGRALFSGLYGSINSNIIPSFCSSLENGGDHQDSAVSNNLVQMYPAAKRIRHSVSEESVTGGEGETRDFLGVGMHTLCHPSAVNGWI | 448 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 2594541 | 2597247 | + | Hsped.02g02630.1 | Hepe02g0263 | 561764 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Hepe02g0263 | 448 | SMART | c2h2final6 | 130 | 150 | IPR013087 | - | |
Hepe02g0263 | 448 | SMART | c2h2final6 | 54 | 76 | IPR013087 | - | |
Hepe02g0263 | 448 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 129 | 153 | - | - | |
Hepe02g0263 | 448 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 156 | 195 | - | - | |
Hepe02g0263 | 448 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 21 | 437 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Hepe02g0263 | 448 | SUPERFAMILY | beta-beta-alpha zinc fingers | 53 | 150 | IPR036236 | - | |
Hepe02g0263 | 448 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 56 | 76 | IPR013087 | - | |
Hepe02g0263 | 448 | FunFam | protein indeterminate-domain 12-like | 33 | 101 | - | - | |
Hepe02g0263 | 448 | Gene3D | Classic Zinc Finger | 88 | 178 | - | - | |
Hepe02g0263 | 448 | Gene3D | Classic Zinc Finger | 50 | 77 | - | - | |
Hepe02g0263 | 448 | Pfam | Zinc finger, C2H2 type | 54 | 76 | IPR013087 | - | |
Hepe02g0263 | 448 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 108 | 187 | - | - | |
Hepe02g0263 | 448 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 54 | 76 | IPR013087 | - | |
Hepe02g0263 | 448 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 91 | 125 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Hepe02g0263 | Hepe-Chr2:2594541 | Hepe03g2035 | Hepe-Chr3:77745861 | 3.59e-103 | dispersed | |
Hepe02g0263 | Hepe-Chr2:2594541 | Hepe08g0425 | Hepe-Chr8:3743018 | 4.29e-119 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
54946 | None | None | None | None | Hepe | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Hepe02g0263 | K25870 | - | csv:101207997 | 560.451 |