Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0263 ATGTCTGAAGAGCAAGCAATTTCAAATGCTTTCATTTGCAGCATCCCATCACTTGGATCCATCAACCCTCCCAAGAAGAAGAGAAATCTCCCTGGAAATCCAGATCCTGAAGCGGAAGTTGTAGCGTTGTCGCCGAAGACCCTAATGGCGACGAACCGATTCTTGTGCGAGATATGTGGGAAGGGTTTTCAAAGGGATCAAAACCTACAGCTGCATAGGAGAGGACACAATCTTCCATGGAAGCTGAAGCAAAGAAGCAACAAAGAGCCAAGGAAGAGAGTTTATGTTTGTCCAGAGAAGAGTTGTGTCCATCACCATCCTTCAAGGGCTCTTGGAGACCTCACAGGGATTAAAAAGCACTTTTGCAGGAAGCACGGCGAGAAGAAGTGGAAATGTGAGAAATGCTCCAAGAAATATGCTGTGCAGTCAGATTGGAAAGCACACTCCAAAACTTGTGGCACCAAAGAGTATAAATGTGACTGTGGAACTCCATTTTCAAGGAGAGATAGCTATGTAACTCACAGAGCATACTGTGTGGCATTAGCAGAAGAAACAGCAAGACTAAATGCAGCATCAACCATGCCCAACAACAACAACAACAACAATTCAATAGCAGCCACAGGTGATCACAACAACATCAACATCAACAACTACCATTTCCTTAAGCCCACCACCAATAATCCTCAACAATATTTCCCCTCCTCAAACTTTTTCAGACCAGATCATGAAATTACTTCCCAAATGTTCCTCAATAACAACAACAACATTAATAATCTCACACCCACATTAGGATTCCCTTTTTGGATGGCCCAATTAGGATCAGCTGCTGCAAATAACTCCCACCAAATCAATAATCTCCAAGACAACAACAATTTCCATCACCCATTTGCACAACCAACAACAACAACAACAAAAACAAGCTCTCTTGAGCATTCAGTTCCTTCCTTGTACAGCAATGAGGAACAACAATCCCATCAAGCTATGGCATCATCAGCCAACATGTCAGCCACTGTTTTGCTGCAAAAGGCTGCACAAATTGGAGTCACAAGCTCCACAGCAACAACAACAGACCCATCATTAATGATGGGAAGGGCTTTGTTTTCAGGGCTTTATGGCTCAATAAACTCAAACATTATTCCTAGTTTTTGCAGCAGCCTTGAAAATGGTGGAGATCATCAAGACTCTGCTGTCAGTAATAATTTGGTGCAAATGTACCCTGCAGCTAAGAGAATTAGGCACTCAGTTAGTGAAGAAAGTGTCACTGGTGGAGAAGGAGAGACAAGGGATTTCTTGGGTGTGGGCATGCACACCCTATGTCATCCATCAGCAGTCAATGGATGGATCTGA 1347 43.28 MSEEQAISNAFICSIPSLGSINPPKKKRNLPGNPDPEAEVVALSPKTLMATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRSNKEPRKRVYVCPEKSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYKCDCGTPFSRRDSYVTHRAYCVALAEETARLNAASTMPNNNNNNNSIAATGDHNNININNYHFLKPTTNNPQQYFPSSNFFRPDHEITSQMFLNNNNNINNLTPTLGFPFWMAQLGSAAANNSHQINNLQDNNNFHHPFAQPTTTTTKTSSLEHSVPSLYSNEEQQSHQAMASSANMSATVLLQKAAQIGVTSSTATTTDPSLMMGRALFSGLYGSINSNIIPSFCSSLENGGDHQDSAVSNNLVQMYPAAKRIRHSVSEESVTGGEGETRDFLGVGMHTLCHPSAVNGWI 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2594541 2597247 + Hsped.02g02630.1 Hepe02g0263 561764
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0263 448 SMART c2h2final6 130 150 IPR013087 -
Hepe02g0263 448 SMART c2h2final6 54 76 IPR013087 -
Hepe02g0263 448 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 129 153 - -
Hepe02g0263 448 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 156 195 - -
Hepe02g0263 448 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 437 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Hepe02g0263 448 SUPERFAMILY beta-beta-alpha zinc fingers 53 150 IPR036236 -
Hepe02g0263 448 ProSitePatterns Zinc finger C2H2 type domain signature. 56 76 IPR013087 -
Hepe02g0263 448 FunFam protein indeterminate-domain 12-like 33 101 - -
Hepe02g0263 448 Gene3D Classic Zinc Finger 88 178 - -
Hepe02g0263 448 Gene3D Classic Zinc Finger 50 77 - -
Hepe02g0263 448 Pfam Zinc finger, C2H2 type 54 76 IPR013087 -
Hepe02g0263 448 FunFam protein indeterminate-domain 5, chloroplastic-like 108 187 - -
Hepe02g0263 448 ProSiteProfiles Zinc finger C2H2 type domain profile. 54 76 IPR013087 -
Hepe02g0263 448 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 91 125 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0263 Hepe-Chr2:2594541 Hepe03g2035 Hepe-Chr3:77745861 3.59e-103 dispersed
Hepe02g0263 Hepe-Chr2:2594541 Hepe08g0425 Hepe-Chr8:3743018 4.29e-119 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54946 None None None None Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0263 K25870 - csv:101207997 560.451