Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0272 ATGCCAAAGAACAAGGGAAAAGGAGGAAAGAATAGGAAGAGAGCTAAGAATGAGGCAGATGATGAGAAGCGTGAGCTTATGTTTAAGGAAGATGGTCGGTGTGAAGCGATGTGTATCGATGGGACTAAACGTCTTTGCCATATTCGGGGAAAAATGCACAAGAAAGTTTGGATTGCAGCTGGGGATATCATACTCGGTGGTCTCCGTGACTATCAAGACGACAAAGCTGATGTGATTCTCAAATACATGCCTGATGAAGCCAGGCTTTTGAAAGCTTACAGTGAGCTGAGCTACCTGAGAATACACGTCTTAACGAGGGCATTGTTGGCGGTATGGATGATGATGATGAAGGTGGTGGTGATGCTTATATTCAGTTGGAGGATGAAGACATTGACAAGATCTAGATGTTAG 411 44.04 MPKNKGKGGKNRKRAKNEADDEKRELMFKEDGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILGGLRDYQDDKADVILKYMPDEARLLKAYSELSYLRIHVLTRALLAVWMMMMKVVVMLIFSWRMKTLTRSRC 136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2661534 2662139 + Hsped.02g02720.1 Hepe02g0272 561773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0272 136 Pfam Translation initiation factor 1A / IF-1 31 80 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe02g0272 136 PANTHER EIF-1A 1 97 IPR001253 GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0005737(PANTHER)|GO:0006413(PANTHER)|GO:0006413(InterPro)
Hepe02g0272 136 Coils Coil 12 32 - -
Hepe02g0272 136 MobiDBLite consensus disorder prediction 1 22 - -
Hepe02g0272 136 SUPERFAMILY Nucleic acid-binding proteins 2 96 IPR012340 -
Hepe02g0272 136 SMART eIF1neu4 28 97 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe02g0272 136 CDD S1_IF1A 31 96 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe02g0272 136 Gene3D - 2 102 IPR012340 -
Hepe02g0272 136 ProSiteProfiles S1 domain IF1 type profile. 31 83 IPR006196 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Hepe02g0272 136 Hamap Translation initiation factor 1A [eif1a]. 3 97 IPR001253 GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0272 Hepe-Chr2:2661534 Hepe05g1235 Hepe-Chr5:59277457 1.32e-57 dispersed
Hepe02g0272 Hepe-Chr2:2661534 Hepe08g0412 Hepe-Chr8:3671443 2.27e-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0272 K03236 - mtr:25500774 173.711