Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0293 ATGTCTCAAAATTCTAAGTTCTCTTGTTCTAAAGTTAGATTACCTGCTGCTTTCAAGACGAAGAGGGCTAAGGAGCATTTCCATGCCCAACGGTGGAGTAACCTTGTTCTTTATCTCTTGCCATTTGGCTTGATTTTGATTCTGGGTCTTTGGTATATCTTTAGTCTTTGTGATGGGAGTTCAGTTCGGAAAGTGGAGATTCCAGATACGTGTAGAGAGAAGGCCAGGAACTTGCTGAAGCATTCCAATGTCAGCAAGTGTCATTTTCATGCTTTGGCTTCATTCTTCTTTCATTCAGATCAGACAGCACCTCTCCAGTGTGCTAAAGACCCAGGGCCTGGTATTGCACTGAAAGATTGCATTGCTTGTGCTTTGAAGATATTAGAGGAGGAGCAAGACTTGCAAAAGCAGCATGGGTGGCTTTCTGAAAATTTACAATCTGAAGGCCAGTGCCCAATTAGGGGTGAGATGGACTCCTTCAATATTGATCTATTGCAGTTAGTGGACAAGACACGCTCACTTACTTCACAATCTTCTTCTGCATTTGTGTCTCCTTGTCATCAGATTCATAGAGAGAAGATCTTGCATATTAAGGAAATTGGAAATGAGAATTCTCGAAGTTTGAATGGATTAGTGGCGTGCTTATGGATCCTTGCTGTAGTGATATCATGCCTGAAGATGTCTAGTTTTCATTTGAAATTAAGGAACCATAAAAACAAGCCAATAAAGCATCCATCGGTTGAGAATCAGCCAGTGATTCAGCTGCGGAAGGTGTTGCTGCAGCAGAAGCAGTTAGATCCATCTCCAAGTCCTAAAGGGGCTGGAAAATGGAGAAAGAAGCTTCTTATAATATTTGTTTTACTTGGTATTATTGGATCCTTTTGGCTCTTTTGGCATTTAAACAACAAAATCATCTGGAGGAGAGAAGAAACACTTGCTAACATGTGTGATGAGCGAGCTCGAATGTTACAGGATCAATTCAATGTTAGCATGAATCATGTTCATGCCTTGGCTATCCTGGTCTCCACTTTTCATCATGGCAAGCATCCTTCTGCCATTGATCAGAAAACATTCAGTGAATATGCAGAAAGAACAGCTTTTGAACGACCACTAACCAGTGGGGTGGCTTATGCTTTGAAAGTTAATCATTCAGAAAGAAAGCAATTTGAAGAGGAACATGGGTGGACAATTAAGAAGATGGGAACAGAGGACCAAACTCTGGTTCAGGATTGTATTCCTGAGAATTTAGACACTGCTCCTTTTCAGGATGAATATGCACCTGTGATATTTTCACAAGAATCTGTATCACATATAGTTTCCATTGACATGATGTCTGGAAAGGAAGACCGTGAAAACATCTTGCGAGCGAGGGCTTCAGGGAAGGGAGTGCTGACATCTCCTTTCAAGCTTCTTAAGTCCAATCACGTAGGTGTTGTACTCACTTTTGCTGTCTATAACACCGACCTTCCTCCTGATGCAACACCAGTGCAACGTACTGAAGCTACTGTTGGGTATCTAGGAGCATCCTATGATGTTCCATCACTGGTTGACAAGCTTCTGCACCAACTCTCCAGCAAACAATCAATTGTTGTTGATGTTTATGATACAACTAATGCATCTGCTCCCATCAAGATGTATGGATCTGATGTAATTGATACTGGTCTATTGCACATTAGCAACCTGGATTTTGGAGACCCCCAAAGGAAGCATGAGATGCATTGCAGATTTAAGCAGAAGCCTCAATTACCATGGATGGCTATAAATGCATCTGTCGGAGTTCTAGTTATCACTTTACTCGTTGGCCATATCTTTTATGCGGCCATAACTCGAATTGCAAAAGTGGAGAATGACTATCGTGAGATGATGGAACTCAAGACTCGTGCTGAAGCTGCAGATGTGGCAAAGTCTCAGTTTCTTGCAACTGTTTCTCACGAGATCAGGACGCCAATGAATGGTGTTTTAGGGATGCTGAAAATGCTGATGGACACTGATCTTGACCCAAACCAACTGGACTATGCCCAGACTGCATATGATAGTGGGAAAGAATTAATATCACTAATAAATGAGGTTCTCGACCAAGCTAAAATAGAATCAGGCAGGCTTGAACTTGAAGATGTACCATTCGATCCACGAGCTTTACTGGACAATGTGCTGTCAATGTTCTCTGGAAAATGTCATGAGAAGGGGATAGAGTTAGCTGTTTATGTCTCTAATCTGGTCCCTGAAGTTCTCATTGGTGACCCTGGACGCTTCCGGCAGATAATTACCAATCTTGTGGGAAATTCAATTAAGTTCACCAACGACAGAGGACACATATTTGTTATTGTACACCGGGCAGACGAAGTGAGGACTCCACTTGATGTGATGGACAGTGTGCTAAGTCAAGGCTTAGATTTAGTAAAAGAGATGCCGAGAAATAGTCATAATACGTTAAGTGGGTTTCCAGTGGTCGAAAGGTGCAAGAGTTGGGAGCATTTCGAGATATTTAGTAGAACAGATGCGATGAAGGAAGATGACTTAATTAAATTGCTTGTATCAGTCGAGGATACAGGTCATGGAATTCCTTTAGAAGCGCAAAATCGAATTTTTACGCCTTTTATGCAAGCTGATAGTTCCACTTCACGCAAGTATGGTGGGACTGGAATAGGTCTGAGCATCAGCAAATGTCTGGTGGATCTAATGGGTGGAGAGATAGGTTTTGTGAGCCAACCTGGTGTTGGCAGCACATTTTCATTTACTGCATGTTTGAGAAAAGGCGATACAAGGTCTCTCAATACAAAATGGCAGCAGAATGATTCAGCTGCATTAGATTTCCGAGGACTGCGAGCATTGGTAATAGACAATAGAAGCATTAGAGCTGAGGTAACAAAATATCATCTCAAGAGGTTAGGGATCTCAGTGGATATAGTTTCAAGTCTGGTTTCAGCACATGAATACTTTACCAATAATTGCATCAAAAGTCCATCCAAGCCTTTGGCCATGGTGCTTATTGACAAAGATGTATGGAATAAGGAAACCGGTCCGATAATCCCTCGCGTGTTTAAAGGACATGGAGTAAATGGCAAGGAAGAATCAACAGAAAGTCCTAAGATCTTTCTCTTAGCTATCTCCATTAGCCTTCAAGAGACGAGAGCTCTCAAGTCAACTGGTTATGTTAATAATGTAATGATAAAACCCCTTAGGTTGGGTGTCTTGATCGGATGCTTCCAGGAAGCGTTCGGGAAGGTAAATAGAAAAAAACCGTCTATTCTCGGGAACTTACTGAGAGAAAAGAAAATATTGGTGGTCGATGATAATGCAGTTAATAGAAGAGTTGCAGAAGGTGCTCTAAAGAATTATGGAGCAAAGGTTACCTGTGTGGAAAGTGGTAGAGCTGCTATTTCATTGTTACATCCACCACACAAGTTTGATGCTTGCTTCATGGATATTCAGATGCCTGAGATGGATGGGTTTGAAGCAACACGACAGATACGAAATATTGAAAATAAGGTTAATGAGGACATTGCTTCTGGGAATGAATCAATTGAGATGTTTGGGAATGTGGTTCATTGGCATACACCAGTATTGGCCATGACAGCTGATGTGATTCAGGCTACAAATGAAGCATGCATGAACTGCGGGATGGATGGCTATGTTGCAAAACCTTTCGAAGAAGAAAAATTATATTCAGCGGTAGCTCGTTTCTTTGGGTCCGAGGATTGA 3702 41.68 MSQNSKFSCSKVRLPAAFKTKRAKEHFHAQRWSNLVLYLLPFGLILILGLWYIFSLCDGSSVRKVEIPDTCREKARNLLKHSNVSKCHFHALASFFFHSDQTAPLQCAKDPGPGIALKDCIACALKILEEEQDLQKQHGWLSENLQSEGQCPIRGEMDSFNIDLLQLVDKTRSLTSQSSSAFVSPCHQIHREKILHIKEIGNENSRSLNGLVACLWILAVVISCLKMSSFHLKLRNHKNKPIKHPSVENQPVIQLRKVLLQQKQLDPSPSPKGAGKWRKKLLIIFVLLGIIGSFWLFWHLNNKIIWRREETLANMCDERARMLQDQFNVSMNHVHALAILVSTFHHGKHPSAIDQKTFSEYAERTAFERPLTSGVAYALKVNHSERKQFEEEHGWTIKKMGTEDQTLVQDCIPENLDTAPFQDEYAPVIFSQESVSHIVSIDMMSGKEDRENILRARASGKGVLTSPFKLLKSNHVGVVLTFAVYNTDLPPDATPVQRTEATVGYLGASYDVPSLVDKLLHQLSSKQSIVVDVYDTTNASAPIKMYGSDVIDTGLLHISNLDFGDPQRKHEMHCRFKQKPQLPWMAINASVGVLVITLLVGHIFYAAITRIAKVENDYREMMELKTRAEAADVAKSQFLATVSHEIRTPMNGVLGMLKMLMDTDLDPNQLDYAQTAYDSGKELISLINEVLDQAKIESGRLELEDVPFDPRALLDNVLSMFSGKCHEKGIELAVYVSNLVPEVLIGDPGRFRQIITNLVGNSIKFTNDRGHIFVIVHRADEVRTPLDVMDSVLSQGLDLVKEMPRNSHNTLSGFPVVERCKSWEHFEIFSRTDAMKEDDLIKLLVSVEDTGHGIPLEAQNRIFTPFMQADSSTSRKYGGTGIGLSISKCLVDLMGGEIGFVSQPGVGSTFSFTACLRKGDTRSLNTKWQQNDSAALDFRGLRALVIDNRSIRAEVTKYHLKRLGISVDIVSSLVSAHEYFTNNCIKSPSKPLAMVLIDKDVWNKETGPIIPRVFKGHGVNGKEESTESPKIFLLAISISLQETRALKSTGYVNNVMIKPLRLGVLIGCFQEAFGKVNRKKPSILGNLLREKKILVVDDNAVNRRVAEGALKNYGAKVTCVESGRAAISLLHPPHKFDACFMDIQMPEMDGFEATRQIRNIENKVNEDIASGNESIEMFGNVVHWHTPVLAMTADVIQATNEACMNCGMDGYVAKPFEEEKLYSAVARFFGSED 1233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2836260 2845613 - Hsped.02g02930.1 Hepe02g0293 561794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0293 1233 Gene3D CHASE domain 353 580 IPR042240 -
Hepe02g0293 1233 Pfam CHASE domain 352 546 IPR006189 -
Hepe02g0293 1233 FunFam Histidine kinase 4 606 697 - -
Hepe02g0293 1233 FunFam Histidine kinase 3 1086 1233 - -
Hepe02g0293 1233 ProSiteProfiles CHASE domain profile. 349 573 IPR006189 -
Hepe02g0293 1233 CDD HisKA 634 695 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe02g0293 1233 SUPERFAMILY CheY-like 937 1073 IPR011006 -
Hepe02g0293 1233 Pfam His Kinase A (phospho-acceptor) domain 634 699 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe02g0293 1233 CDD REC_hyHK_CKI1_RcsC-like 1093 1225 - -
Hepe02g0293 1233 Gene3D - 300 352 - -
Hepe02g0293 1233 Gene3D - 59 104 - -
Hepe02g0293 1233 FunFam Histidine kinase 4 353 580 - -
Hepe02g0293 1233 SMART HKATPase_4 746 918 IPR003594 -
Hepe02g0293 1233 Gene3D - 1086 1232 - -
Hepe02g0293 1233 Gene3D - 605 697 - -
Hepe02g0293 1233 PRINTS Bacterial sensor protein C-terminal signature 878 896 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe02g0293 1233 PRINTS Bacterial sensor protein C-terminal signature 843 857 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe02g0293 1233 PRINTS Bacterial sensor protein C-terminal signature 861 871 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe02g0293 1233 PRINTS Bacterial sensor protein C-terminal signature 902 915 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Hepe02g0293 1233 SMART CHASE_2 349 548 IPR006189 -
Hepe02g0293 1233 CDD HATPase_EvgS-ArcB-TorS-like 751 916 - -
Hepe02g0293 1233 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 688 913 IPR036890 -
Hepe02g0293 1233 Coils Coil 611 631 - -
Hepe02g0293 1233 SMART REC_2 1091 1225 IPR001789 GO:0000160(InterPro)
Hepe02g0293 1233 ProSiteProfiles Response regulatory domain profile. 942 1073 IPR001789 GO:0000160(InterPro)
Hepe02g0293 1233 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 842 914 IPR003594 -
Hepe02g0293 1233 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 619 700 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe02g0293 1233 Pfam Response regulator receiver domain 1093 1225 IPR001789 GO:0000160(InterPro)
Hepe02g0293 1233 SUPERFAMILY CheY-like 1089 1229 IPR011006 -
Hepe02g0293 1233 PANTHER TWO-COMPONENT HISTIDINE KINASE 267 1228 IPR050956 -
Hepe02g0293 1233 ProSiteProfiles Response regulatory domain profile. 1092 1229 IPR001789 GO:0000160(InterPro)
Hepe02g0293 1233 ProSiteProfiles Histidine kinase domain profile. 641 918 IPR005467 -
Hepe02g0293 1233 SMART HisKA_10 634 699 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe02g0293 1233 Gene3D - 698 919 IPR036890 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0293 Hepe-Chr2:2836260 Hepe03g1107 Hepe-Chr3:63614763 0.0 dispersed
Hepe02g0293 Hepe-Chr2:2836260 Hepe08g0395 Hepe-Chr8:3532040 0.0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54949 PF03924 CHASE 9.30E-35 CL0165 Hepe TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0293 K14489 - vvi:100263145 1571.99