Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hepe02g0311 | ATGTCTTCAACTTCAATAAATAAGGCTGAGTGTTCTAAGACCAGCTGTGACCGATCAAAACATGGGGCTCATGTGGTTGCACAGACCCCAATTGATGCAAAGCTTCAAGTAGAGTTTGAAGGTTCTGAAAGGTTCTTTGATTACTCTGCATCGGTTGATTTGAAGGTTTCAAGTTCCACTAGCAATTTTCATGCCTCCACTGTACAGTCATACCTTCAAAACATACAGAGAGGAAGTCAAGTTCAACCATTTGGTTGTATGATTGCTGTTAATGGGGAAAACTTGTCAGTCCTTGCCTACAGTGAAAATGCCCCCGAAATGTTGGACTTGGCCCCACATGCTGTGCCTAACATCGAGCAGCAAGAAGCTCTAACTTTTGGAACAGATGTACGAACACTTTTTCGTTCCCCTGGAGCTGCCGCTTTACAGAAGGCAGCCGACTTCAAGGAAGTTAATCTTCTCAATCCTATACTGATACATTGTAAAACTTCAGGCAAACCATTTTATGCAATTTTGCATCGAGTAGACGTGGGATTGATTATTGATTTGGAACCAGTAAATCCAGCTGATGTGCCAGTGACCGCAGCTGGGGCATTGAAATCTTATAAGCTAGCAGCTAAAGCCATCTCAAAATTGCAGTCCTTGCCGAGTGGGAATATATCTCTTTTATGTGAGGTATTGGTTAAGGAGGTTAGTGATTTGACAGGTTACGATCGAGTAATGGTGTATAAATTCCACGATGACGAGCACGGAGAAGTTGTAGCTGAGTGCTGCCGACCTGACTTAGAACCATATCTTGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTCCTGTTTTTGAAGAATAAGGTCAGAATGATATGTGATTGTTTGGCACCTCCGGTTAAAGTGCTTCAAGACAGAAGATTGACTCAGCCATTAAGTCTATGTGGATCTGCACTGAGGGCTCCTCATGGTTGTCATGCTCGGTATATGATGAATATGGGTTCTATTGCATCTCTTGTGATGTCTATTACAATCAATGAGAATGATAGTGAATCAGAGAATGATCAAGAAAAGGAAAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCACACAAGCCCTAGGTTTGTTCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTCTTTGGTATACAGATTAACAAAGAAGTGGAGTTGCAAACTCAGTTGACAGAAAAACACATATTGCGAATTCAAACGGTTCTTTGTGATATGCTGCTAAGAGATGCTCCAGTAGGAATCGTTACTCAATCTCCCAATATTATGGATCTTGTTAAGTGTGATGGGGCTGCCTTATATTACAGAAAGAAATTTTGGTTACTTGGAGTCACCCCCACAGAGGCACAAATTAAATACATATCTGAATGGCTTCTCAAAGACCATAGTGGAAGCACAGGTTTAAGTACTGATAGCCTTATTGAAGCTGGTTTCTATGGTGCTTCTGCCCTTGGTGACGAGGTTTGTGGAATGGCTGCTGTTAGGATTACATCTAGGGACTTCCTTTTCTGGTTTCGGTCGCACATGGCGAAAGAAATCAGGTGGGGTGGTGCGAAACATGATCCTGGTGACCAGGATGATGGACGAAAGATGCATCCGAGATCATCATTTAAGGCTTTTCTGGAAGTGATGAAGCGGCGCAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCACTGCAATTAATATTACGAGGTTCTTTACAAGATGAAATTGAAGAAGAATGCAAAGCAATTACAAATGTCCCATCAGTTGACGAGAAGACACAACAGTTGGATGAACTGCGTGTGATCACAAATGAGATGGTTCGCCTAATTGAGACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTGGGCAGGATCAATGGTTGGAACTCAAAAGCTACTGAACTTACAGGATTAGCTATCCAGCAAGCCATTGGCATGCCCTTAGTCGATTGTCTGGTGAATGATTCTGTTAAGGTGGTAAAGAAAATGCTTTCCTTGGCCATTCAAGGTATTGAAGAGAAGAACATTGAAATCAAACTCAAAACATTTGGAATTCCGGGACAAGATGGTCCAGTGATCTTAGAAGTTAACTCATGCTGTAGCCGAGACCTTAACGATAATGTTGTAGGAATGTGCTTCATAGGGCAGGATGTTACTAAACAAAAACAGTTAATGAACCAATACACCCAAATCCAAGGTGATTACACGGGGATTATGCGAAATCCATCTGCACTTATTCCTCCAATTTTTATGACCGATGATGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGGGAAGAGATGAAAAATAGGATGCTTCTTGGGGAGGTTTTCACACTTGAAAATTTCGGCTGCTGTGTGAAAGATCAGACATTGACCAAGCTTAGGATATTACTGCATAGAGTAATTTCAGGCCAGGATACAGAGAAATTTTTGTTTAGGTTCTGTGATCGTGAAGGAAATTATGTTGAAACCTTGCTTACTGCAAGCAAAAGGACTGATACAAATGGTAATATCACTGGGGTTTTCTTCTTCTTGCACATGGCTAGTCCAGAACTTCATTGTGCTTTGGAGATGCAGCGGATATCAGAACAAGCTACAGCCGATAATCTCCATAAATTGGCATATCTACGTCAAGAAATTCGAAAACCACTTAGTGGGATTACATTTATGCAGAATCTAATGGGTTCATCCGACTTAAACAAAGAGCAAAAGCAGCTACTTAAATTGAACACTTCGTGTCGTGAACAACTACACAAGATTGTAGATGATACTGATATCCAGAGTATTGAGGAATGTTACATGGAAACAAACTGTAGTGGATTCAACTTTGGAGATGTTCTTGACGTTGTAACAAATCAAATCATGATTTTGAGCCAAGAGCGCGAGGTGAAGATCATTTGTGAATCACCTTCTGAAGTGTCATCTCTGCACTTGTATGGAGATAACATGAGGCTACAGCAGGTGCTCTCTGAGTTCTTGACTAACACACTTCTCTTCACTTGCAAAGGATCATCCGTTGTCTTCAAAACAACTCCTAGGAAGGAACGTATTGGGAAGGGAATCCACATTGTTCATCTTGAATTGAGGATCACCCATCCCGCTCCGGGACTTCCTGCGCACTTAATCCGAGAGATGTTTGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCCTATACATGAGCCACAAGCTTGTGAAGATCATGAATGGCACTGTACAGTATCTTCGAGAGGCCGAAACCTCGTCATTCATCATCCTCATAGAATTCCCCTTGGTAGAACATATTTCTTGA | 3357 | 41.76 | MSSTSINKAECSKTSCDRSKHGAHVVAQTPIDAKLQVEFEGSERFFDYSASVDLKVSSSTSNFHASTVQSYLQNIQRGSQVQPFGCMIAVNGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILIHCKTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRPDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKERKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLTEKHILRIQTVLCDMLLRDAPVGIVTQSPNIMDLVKCDGAALYYRKKFWLLGVTPTEAQIKYISEWLLKDHSGSTGLSTDSLIEAGFYGASALGDEVCGMAAVRITSRDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRKMHPRSSFKAFLEVMKRRSQPWEDVEMDAIHSLQLILRGSLQDEIEEECKAITNVPSVDEKTQQLDELRVITNEMVRLIETAAVPILAVDVLGRINGWNSKATELTGLAIQQAIGMPLVDCLVNDSVKVVKKMLSLAIQGIEEKNIEIKLKTFGIPGQDGPVILEVNSCCSRDLNDNVVGMCFIGQDVTKQKQLMNQYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRREEMKNRMLLGEVFTLENFGCCVKDQTLTKLRILLHRVISGQDTEKFLFRFCDREGNYVETLLTASKRTDTNGNITGVFFFLHMASPELHCALEMQRISEQATADNLHKLAYLRQEIRKPLSGITFMQNLMGSSDLNKEQKQLLKLNTSCREQLHKIVDDTDIQSIEECYMETNCSGFNFGDVLDVVTNQIMILSQEREVKIICESPSEVSSLHLYGDNMRLQQVLSEFLTNTLLFTCKGSSVVFKTTPRKERIGKGIHIVHLELRITHPAPGLPAHLIREMFDDNNDSSKEGLGLYMSHKLVKIMNGTVQYLREAETSSFIILIEFPLVEHIS | 1118 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 2965160 | 2970073 | - | Hsped.02g03110.1 | Hepe02g0311 | 561812 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hepe02g0311 | 1118 | CDD | PAS | 624 | 730 | IPR000014 | - | |
| Hepe02g0311 | 1118 | ProSiteProfiles | Histidine kinase domain profile. | 896 | 1115 | IPR005467 | - | |
| Hepe02g0311 | 1118 | ProSiteProfiles | PAS repeat profile. | 613 | 683 | IPR000014 | - | |
| Hepe02g0311 | 1118 | SMART | gaf_1 | 219 | 408 | IPR003018 | GO:0005515(InterPro) | |
| Hepe02g0311 | 1118 | PANTHER | OS08G0260000 PROTEIN | 1 | 992 | - | - | |
| Hepe02g0311 | 1118 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 620 | 735 | IPR035965 | - | |
| Hepe02g0311 | 1118 | ProSiteProfiles | PAS repeat profile. | 746 | 798 | IPR000014 | - | |
| Hepe02g0311 | 1118 | Gene3D | PAS domain | 600 | 745 | - | - | |
| Hepe02g0311 | 1118 | PRINTS | Phytochrome signature | 635 | 650 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe02g0311 | 1118 | PRINTS | Phytochrome signature | 728 | 748 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe02g0311 | 1118 | PRINTS | Phytochrome signature | 234 | 253 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe02g0311 | 1118 | PRINTS | Phytochrome signature | 616 | 632 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe02g0311 | 1118 | PRINTS | Phytochrome signature | 513 | 532 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe02g0311 | 1118 | PRINTS | Phytochrome signature | 546 | 564 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe02g0311 | 1118 | PRINTS | Phytochrome signature | 708 | 725 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe02g0311 | 1118 | PRINTS | Phytochrome signature | 134 | 156 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe02g0311 | 1118 | PRINTS | Phytochrome signature | 428 | 448 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe02g0311 | 1118 | PRINTS | Phytochrome signature | 319 | 340 | IPR001294 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe02g0311 | 1118 | CDD | PAS | 757 | 867 | IPR000014 | - | |
| Hepe02g0311 | 1118 | SMART | pas_2 | 615 | 681 | IPR000014 | - | |
| Hepe02g0311 | 1118 | SMART | pas_2 | 745 | 815 | IPR000014 | - | |
| Hepe02g0311 | 1118 | Pfam | Phytochrome region | 411 | 585 | IPR013515 | GO:0006355(InterPro)|GO:0009584(InterPro) | |
| Hepe02g0311 | 1118 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 760 | 864 | IPR035965 | - | |
| Hepe02g0311 | 1118 | Gene3D | PAS domain | 74 | 322 | - | - | |
| Hepe02g0311 | 1118 | CDD | HisKA | 894 | 944 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Hepe02g0311 | 1118 | SUPERFAMILY | GAF domain-like | 406 | 586 | - | - | |
| Hepe02g0311 | 1118 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 75 | 188 | IPR035965 | - | |
| Hepe02g0311 | 1118 | SUPERFAMILY | GAF domain-like | 199 | 395 | - | - | |
| Hepe02g0311 | 1118 | CDD | HATPase_Phy-like | 1000 | 1111 | IPR044767 | - | |
| Hepe02g0311 | 1118 | Gene3D | - | 200 | 559 | IPR029016 | - | |
| Hepe02g0311 | 1118 | FunFam | Phytochrome | 609 | 740 | - | - | |
| Hepe02g0311 | 1118 | Pfam | PAS fold | 756 | 867 | IPR013767 | GO:0006355(InterPro) | |
| Hepe02g0311 | 1118 | Pfam | PAS fold | 616 | 730 | IPR013767 | GO:0006355(InterPro) | |
| Hepe02g0311 | 1118 | Pfam | His Kinase A (phospho-acceptor) domain | 894 | 952 | IPR003661 | GO:0000155(InterPro)|GO:0007165(InterPro) | |
| Hepe02g0311 | 1118 | SUPERFAMILY | ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 948 | 1107 | IPR036890 | - | |
| Hepe02g0311 | 1118 | Pfam | GAF domain | 222 | 397 | IPR003018 | GO:0005515(InterPro) | |
| Hepe02g0311 | 1118 | FunFam | Phytochrome | 954 | 1113 | - | - | |
| Hepe02g0311 | 1118 | SMART | HKATPase_4 | 1001 | 1115 | IPR003594 | - | |
| Hepe02g0311 | 1118 | NCBIfam | PAS domain S-box protein | 760 | 866 | IPR000014 | - | |
| Hepe02g0311 | 1118 | NCBIfam | PAS domain S-box protein | 620 | 737 | IPR000014 | - | |
| Hepe02g0311 | 1118 | Pfam | PAS fold | 71 | 186 | IPR013654 | GO:0006355(InterPro) | |
| Hepe02g0311 | 1118 | Gene3D | - | 929 | 1107 | IPR036890 | - | |
| Hepe02g0311 | 1118 | Gene3D | PAS domain | 759 | 870 | - | - | |
| Hepe02g0311 | 1118 | ProSiteProfiles | Phytochrome chromophore attachment site domain profile. | 219 | 388 | IPR016132 | - | |
| Hepe02g0311 | 1118 | ProSitePatterns | Phytochrome chromophore attachment site signature. | 319 | 328 | IPR013516 | - | |
| Hepe02g0311 | 1118 | Gene3D | - | 403 | 576 | IPR043150 | - | |
| Hepe02g0311 | 1118 | FunFam | Phytochrome | 403 | 534 | - | - | |
| Hepe02g0311 | 1118 | Pfam | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 1001 | 1112 | IPR003594 | - | |
| Hepe02g0311 | 1118 | PIRSF | Phytochrome_conventional | 2 | 1118 | IPR012129 | GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Hepe02g0311 | Hepe-Chr2:2965160 | Hepe08g1559 | Hepe-Chr8:21302735 | 0.0 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hepe02g0311 | - | - | - | 0.0 |