Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0311 ATGTCTTCAACTTCAATAAATAAGGCTGAGTGTTCTAAGACCAGCTGTGACCGATCAAAACATGGGGCTCATGTGGTTGCACAGACCCCAATTGATGCAAAGCTTCAAGTAGAGTTTGAAGGTTCTGAAAGGTTCTTTGATTACTCTGCATCGGTTGATTTGAAGGTTTCAAGTTCCACTAGCAATTTTCATGCCTCCACTGTACAGTCATACCTTCAAAACATACAGAGAGGAAGTCAAGTTCAACCATTTGGTTGTATGATTGCTGTTAATGGGGAAAACTTGTCAGTCCTTGCCTACAGTGAAAATGCCCCCGAAATGTTGGACTTGGCCCCACATGCTGTGCCTAACATCGAGCAGCAAGAAGCTCTAACTTTTGGAACAGATGTACGAACACTTTTTCGTTCCCCTGGAGCTGCCGCTTTACAGAAGGCAGCCGACTTCAAGGAAGTTAATCTTCTCAATCCTATACTGATACATTGTAAAACTTCAGGCAAACCATTTTATGCAATTTTGCATCGAGTAGACGTGGGATTGATTATTGATTTGGAACCAGTAAATCCAGCTGATGTGCCAGTGACCGCAGCTGGGGCATTGAAATCTTATAAGCTAGCAGCTAAAGCCATCTCAAAATTGCAGTCCTTGCCGAGTGGGAATATATCTCTTTTATGTGAGGTATTGGTTAAGGAGGTTAGTGATTTGACAGGTTACGATCGAGTAATGGTGTATAAATTCCACGATGACGAGCACGGAGAAGTTGTAGCTGAGTGCTGCCGACCTGACTTAGAACCATATCTTGGCTTGCACTACCCAGCTACTGATATACCTCAAGCTTCAAGGTTCCTGTTTTTGAAGAATAAGGTCAGAATGATATGTGATTGTTTGGCACCTCCGGTTAAAGTGCTTCAAGACAGAAGATTGACTCAGCCATTAAGTCTATGTGGATCTGCACTGAGGGCTCCTCATGGTTGTCATGCTCGGTATATGATGAATATGGGTTCTATTGCATCTCTTGTGATGTCTATTACAATCAATGAGAATGATAGTGAATCAGAGAATGATCAAGAAAAGGAAAGAAAGTTGTGGGGTTTAGTAGTTTGCCATCACACAAGCCCTAGGTTTGTTCCATTTCCTTTGAGATATGCTTGTGAATTCTTGATTCAAGTCTTTGGTATACAGATTAACAAAGAAGTGGAGTTGCAAACTCAGTTGACAGAAAAACACATATTGCGAATTCAAACGGTTCTTTGTGATATGCTGCTAAGAGATGCTCCAGTAGGAATCGTTACTCAATCTCCCAATATTATGGATCTTGTTAAGTGTGATGGGGCTGCCTTATATTACAGAAAGAAATTTTGGTTACTTGGAGTCACCCCCACAGAGGCACAAATTAAATACATATCTGAATGGCTTCTCAAAGACCATAGTGGAAGCACAGGTTTAAGTACTGATAGCCTTATTGAAGCTGGTTTCTATGGTGCTTCTGCCCTTGGTGACGAGGTTTGTGGAATGGCTGCTGTTAGGATTACATCTAGGGACTTCCTTTTCTGGTTTCGGTCGCACATGGCGAAAGAAATCAGGTGGGGTGGTGCGAAACATGATCCTGGTGACCAGGATGATGGACGAAAGATGCATCCGAGATCATCATTTAAGGCTTTTCTGGAAGTGATGAAGCGGCGCAGTCAACCTTGGGAAGATGTGGAAATGGATGCCATCCATTCACTGCAATTAATATTACGAGGTTCTTTACAAGATGAAATTGAAGAAGAATGCAAAGCAATTACAAATGTCCCATCAGTTGACGAGAAGACACAACAGTTGGATGAACTGCGTGTGATCACAAATGAGATGGTTCGCCTAATTGAGACAGCTGCAGTGCCCATCTTGGCTGTAGATGTCTTGGGCAGGATCAATGGTTGGAACTCAAAAGCTACTGAACTTACAGGATTAGCTATCCAGCAAGCCATTGGCATGCCCTTAGTCGATTGTCTGGTGAATGATTCTGTTAAGGTGGTAAAGAAAATGCTTTCCTTGGCCATTCAAGGTATTGAAGAGAAGAACATTGAAATCAAACTCAAAACATTTGGAATTCCGGGACAAGATGGTCCAGTGATCTTAGAAGTTAACTCATGCTGTAGCCGAGACCTTAACGATAATGTTGTAGGAATGTGCTTCATAGGGCAGGATGTTACTAAACAAAAACAGTTAATGAACCAATACACCCAAATCCAAGGTGATTACACGGGGATTATGCGAAATCCATCTGCACTTATTCCTCCAATTTTTATGACCGATGATGATGGCCGGTGCTTGGAATGGAATGATGCAATGGAAAAGTTATCTGGTTTTAGAAGGGAAGAGATGAAAAATAGGATGCTTCTTGGGGAGGTTTTCACACTTGAAAATTTCGGCTGCTGTGTGAAAGATCAGACATTGACCAAGCTTAGGATATTACTGCATAGAGTAATTTCAGGCCAGGATACAGAGAAATTTTTGTTTAGGTTCTGTGATCGTGAAGGAAATTATGTTGAAACCTTGCTTACTGCAAGCAAAAGGACTGATACAAATGGTAATATCACTGGGGTTTTCTTCTTCTTGCACATGGCTAGTCCAGAACTTCATTGTGCTTTGGAGATGCAGCGGATATCAGAACAAGCTACAGCCGATAATCTCCATAAATTGGCATATCTACGTCAAGAAATTCGAAAACCACTTAGTGGGATTACATTTATGCAGAATCTAATGGGTTCATCCGACTTAAACAAAGAGCAAAAGCAGCTACTTAAATTGAACACTTCGTGTCGTGAACAACTACACAAGATTGTAGATGATACTGATATCCAGAGTATTGAGGAATGTTACATGGAAACAAACTGTAGTGGATTCAACTTTGGAGATGTTCTTGACGTTGTAACAAATCAAATCATGATTTTGAGCCAAGAGCGCGAGGTGAAGATCATTTGTGAATCACCTTCTGAAGTGTCATCTCTGCACTTGTATGGAGATAACATGAGGCTACAGCAGGTGCTCTCTGAGTTCTTGACTAACACACTTCTCTTCACTTGCAAAGGATCATCCGTTGTCTTCAAAACAACTCCTAGGAAGGAACGTATTGGGAAGGGAATCCACATTGTTCATCTTGAATTGAGGATCACCCATCCCGCTCCGGGACTTCCTGCGCACTTAATCCGAGAGATGTTTGATGACAACAATGATAGCTCAAAGGAAGGTCTTGGCCTATACATGAGCCACAAGCTTGTGAAGATCATGAATGGCACTGTACAGTATCTTCGAGAGGCCGAAACCTCGTCATTCATCATCCTCATAGAATTCCCCTTGGTAGAACATATTTCTTGA 3357 41.76 MSSTSINKAECSKTSCDRSKHGAHVVAQTPIDAKLQVEFEGSERFFDYSASVDLKVSSSTSNFHASTVQSYLQNIQRGSQVQPFGCMIAVNGENLSVLAYSENAPEMLDLAPHAVPNIEQQEALTFGTDVRTLFRSPGAAALQKAADFKEVNLLNPILIHCKTSGKPFYAILHRVDVGLIIDLEPVNPADVPVTAAGALKSYKLAAKAISKLQSLPSGNISLLCEVLVKEVSDLTGYDRVMVYKFHDDEHGEVVAECCRPDLEPYLGLHYPATDIPQASRFLFLKNKVRMICDCLAPPVKVLQDRRLTQPLSLCGSALRAPHGCHARYMMNMGSIASLVMSITINENDSESENDQEKERKLWGLVVCHHTSPRFVPFPLRYACEFLIQVFGIQINKEVELQTQLTEKHILRIQTVLCDMLLRDAPVGIVTQSPNIMDLVKCDGAALYYRKKFWLLGVTPTEAQIKYISEWLLKDHSGSTGLSTDSLIEAGFYGASALGDEVCGMAAVRITSRDFLFWFRSHMAKEIRWGGAKHDPGDQDDGRKMHPRSSFKAFLEVMKRRSQPWEDVEMDAIHSLQLILRGSLQDEIEEECKAITNVPSVDEKTQQLDELRVITNEMVRLIETAAVPILAVDVLGRINGWNSKATELTGLAIQQAIGMPLVDCLVNDSVKVVKKMLSLAIQGIEEKNIEIKLKTFGIPGQDGPVILEVNSCCSRDLNDNVVGMCFIGQDVTKQKQLMNQYTQIQGDYTGIMRNPSALIPPIFMTDDDGRCLEWNDAMEKLSGFRREEMKNRMLLGEVFTLENFGCCVKDQTLTKLRILLHRVISGQDTEKFLFRFCDREGNYVETLLTASKRTDTNGNITGVFFFLHMASPELHCALEMQRISEQATADNLHKLAYLRQEIRKPLSGITFMQNLMGSSDLNKEQKQLLKLNTSCREQLHKIVDDTDIQSIEECYMETNCSGFNFGDVLDVVTNQIMILSQEREVKIICESPSEVSSLHLYGDNMRLQQVLSEFLTNTLLFTCKGSSVVFKTTPRKERIGKGIHIVHLELRITHPAPGLPAHLIREMFDDNNDSSKEGLGLYMSHKLVKIMNGTVQYLREAETSSFIILIEFPLVEHIS 1118
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 2965160 2970073 - Hsped.02g03110.1 Hepe02g0311 561812

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0311 1118 CDD PAS 624 730 IPR000014 -
Hepe02g0311 1118 ProSiteProfiles Histidine kinase domain profile. 896 1115 IPR005467 -
Hepe02g0311 1118 ProSiteProfiles PAS repeat profile. 613 683 IPR000014 -
Hepe02g0311 1118 SMART gaf_1 219 408 IPR003018 GO:0005515(InterPro)
Hepe02g0311 1118 PANTHER OS08G0260000 PROTEIN 1 992 - -
Hepe02g0311 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 620 735 IPR035965 -
Hepe02g0311 1118 ProSiteProfiles PAS repeat profile. 746 798 IPR000014 -
Hepe02g0311 1118 Gene3D PAS domain 600 745 - -
Hepe02g0311 1118 PRINTS Phytochrome signature 635 650 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe02g0311 1118 PRINTS Phytochrome signature 728 748 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe02g0311 1118 PRINTS Phytochrome signature 234 253 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe02g0311 1118 PRINTS Phytochrome signature 616 632 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe02g0311 1118 PRINTS Phytochrome signature 513 532 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe02g0311 1118 PRINTS Phytochrome signature 546 564 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe02g0311 1118 PRINTS Phytochrome signature 708 725 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe02g0311 1118 PRINTS Phytochrome signature 134 156 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe02g0311 1118 PRINTS Phytochrome signature 428 448 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe02g0311 1118 PRINTS Phytochrome signature 319 340 IPR001294 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe02g0311 1118 CDD PAS 757 867 IPR000014 -
Hepe02g0311 1118 SMART pas_2 615 681 IPR000014 -
Hepe02g0311 1118 SMART pas_2 745 815 IPR000014 -
Hepe02g0311 1118 Pfam Phytochrome region 411 585 IPR013515 GO:0006355(InterPro)|GO:0009584(InterPro)
Hepe02g0311 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 760 864 IPR035965 -
Hepe02g0311 1118 Gene3D PAS domain 74 322 - -
Hepe02g0311 1118 CDD HisKA 894 944 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe02g0311 1118 SUPERFAMILY GAF domain-like 406 586 - -
Hepe02g0311 1118 SUPERFAMILY PYP-like sensor domain (PAS domain) 75 188 IPR035965 -
Hepe02g0311 1118 SUPERFAMILY GAF domain-like 199 395 - -
Hepe02g0311 1118 CDD HATPase_Phy-like 1000 1111 IPR044767 -
Hepe02g0311 1118 Gene3D - 200 559 IPR029016 -
Hepe02g0311 1118 FunFam Phytochrome 609 740 - -
Hepe02g0311 1118 Pfam PAS fold 756 867 IPR013767 GO:0006355(InterPro)
Hepe02g0311 1118 Pfam PAS fold 616 730 IPR013767 GO:0006355(InterPro)
Hepe02g0311 1118 Pfam His Kinase A (phospho-acceptor) domain 894 952 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Hepe02g0311 1118 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 948 1107 IPR036890 -
Hepe02g0311 1118 Pfam GAF domain 222 397 IPR003018 GO:0005515(InterPro)
Hepe02g0311 1118 FunFam Phytochrome 954 1113 - -
Hepe02g0311 1118 SMART HKATPase_4 1001 1115 IPR003594 -
Hepe02g0311 1118 NCBIfam PAS domain S-box protein 760 866 IPR000014 -
Hepe02g0311 1118 NCBIfam PAS domain S-box protein 620 737 IPR000014 -
Hepe02g0311 1118 Pfam PAS fold 71 186 IPR013654 GO:0006355(InterPro)
Hepe02g0311 1118 Gene3D - 929 1107 IPR036890 -
Hepe02g0311 1118 Gene3D PAS domain 759 870 - -
Hepe02g0311 1118 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 219 388 IPR016132 -
Hepe02g0311 1118 ProSitePatterns Phytochrome chromophore attachment site signature. 319 328 IPR013516 -
Hepe02g0311 1118 Gene3D - 403 576 IPR043150 -
Hepe02g0311 1118 FunFam Phytochrome 403 534 - -
Hepe02g0311 1118 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1001 1112 IPR003594 -
Hepe02g0311 1118 PIRSF Phytochrome_conventional 2 1118 IPR012129 GO:0006355(InterPro)|GO:0009585(InterPro)|GO:0009881(InterPro)|GO:0017006(InterPro)|GO:0042803(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0311 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0311 Hepe-Chr2:2965160 Hepe08g1559 Hepe-Chr8:21302735 0.0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe06g0917 . 5 1197 Histidine Kinase Gene Family AT2G17820 65.5 0.0e+00 1455.7
Hepe01g0254 . 21 1006 Histidine Kinase Gene Family AT2G01830 71.8 0.0e+00 1343.9
Hepe02g2600 . 24 984 Histidine Kinase Gene Family AT2G01830 72.1 0.0e+00 1326.6
Hepe02g0293 . 279 1229 Histidine Kinase Gene Family AT2G01830 54.3 2.6e-276 948.7
Hepe03g1107 . 59 1008 Histidine Kinase Gene Family AT2G01830 53.0 3.2e-274 941.8
Hepe08g0395 . 304 1262 Histidine Kinase Gene Family AT2G01830 52.5 4.3e-271 931.4
Hepe01g1937 . 1 996 Histidine Kinase Gene Family AT5G10720 58.3 2.2e-295 1011.9
Hepe08g1559 . 1 1119 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1818.5
Hepe08g1551 . 19 1160 Histidine Kinase Gene Family AT1G09570 70.8 0.0e+00 1615.9
Hepe02g0311 . 18 1110 Histidine Kinase Gene Family AT1G09570 54.4 0.0e+00 1206.4
Hepe05g1374 . 45 1130 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1187.6
Hepe05g1374 . 41 1071 Histidine Kinase Gene Family AT2G18790 79.3 0.0e+00 1657.1
Hepe07g1806 . 24 1046 Histidine Kinase Gene Family AT2G18790 59.7 0.0e+00 1219.1
Hepe02g0311 . 26 1067 Histidine Kinase Gene Family AT2G18790 52.8 0.0e+00 1077.4
Hepe08g1559 . 21 1054 Histidine Kinase Gene Family AT2G18790 52.3 5.4e-312 1067.4
Hepe08g1551 . 45 1094 Histidine Kinase Gene Family AT2G18790 50.3 5.6e-301 1030.8
Hepe02g0311 . 12 1114 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1362.8
Hepe05g1374 . 45 1132 Histidine Kinase Gene Family AT5G35840 52.1 0.0e+00 1137.5
Hepe08g1559 . 9 1113 Histidine Kinase Gene Family AT5G35840 51.8 0.0e+00 1114.0
Hepe05g1374 . 41 1132 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1699.5
Hepe07g1806 . 36 1108 Histidine Kinase Gene Family AT4G16250 57.7 0.0e+00 1255.7
Hepe02g0311 . 26 1113 Histidine Kinase Gene Family AT4G16250 53.0 0.0e+00 1114.8
Hepe08g1559 . 8 1114 Histidine Kinase Gene Family AT4G16250 51.8 0.0e+00 1113.2
Hepe07g1806 . 36 1124 Histidine Kinase Gene Family AT4G18130 62.6 0.0e+00 1346.6
Hepe05g1374 . 49 1141 Histidine Kinase Gene Family AT4G18130 58.3 0.0e+00 1263.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005493 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 7 1 40