Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0325 ATGGGCATCTCCAGTCTCCCAGCTCCATCTGAAGGAGTCCTTAACGTGCTTATTATAAACACTGCACTATCCATTTCCATGTTCAAATGCATTGTTCGTTTGATCCTTGACATTGTAGGGATCCGTCTCTCATCACCATCATCCTTGGTCCCATCATCAGTTTCCTTTGAGAATTCCTCAGAGTTAGGAGATTCCAATCTTGGTTCATCTTGGAGTTACATCGAGATGTTTAGGAACCGATATCCAGCAATTAGGTTTGATAAAGTACAGGGCCCTGAACGTTGTGAACATGACTGCTCGGTCTGCTTAACACAGTTTGAACCTGAGTCGGAGATAAATCACTTATCTTGTGGCCATCTTTTTCACACAGAATGCTTGGAGAAGTGGCTGGACTACTGGAATGTTACATGTCCTCTTTGCAGAACACCTCTAATGTCCGAGGAAGAGAAATCGTGCTTTTGGTGA 465 43.66 MGISSLPAPSEGVLNVLIINTALSISMFKCIVRLILDIVGIRLSSPSSLVPSSVSFENSSELGDSNLGSSWSYIEMFRNRYPAIRFDKVQGPERCEHDCSVCLTQFEPESEINHLSCGHLFHTECLEKWLDYWNVTCPLCRTPLMSEEEKSCFW 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3102759 3104534 - Hsped.02g03250.1 Hepe02g0325 561826
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0325 154 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 146 IPR013083 -
Hepe02g0325 154 Pfam Ring finger domain 98 141 IPR001841 -
Hepe02g0325 154 SUPERFAMILY RING/U-box 91 145 - -
Hepe02g0325 154 PANTHER - 1 154 IPR044249 -
Hepe02g0325 154 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
Hepe02g0325 154 SMART ring_2 99 140 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0325 Hepe-Chr2:3102759 Hepe05g1963 Hepe-Chr5:70105817 1.77e-11 dispersed
Hepe02g0325 Hepe-Chr2:3102759 Hepe08g0373 Hepe-Chr8:3353296 1.86e-70 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0325 K16285 - csv:101215843 257.684