Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0327 ATGGGTTACATATGTGATTTCTGTGCACGTGAAAGAGCGGTTGTTTACTGCCGATCCGATTCTGCTGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCCAACGCGTTGTCAAAGCGCCACTCAAGAACGTTGTTATGTGATCGGTGCCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGATTATGCAGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATCAATTGTTACTCGGGTTGCCCGACGGCTGCGGAGCTCTCGTCTATCTGGTCATTTGTTCTAGATCTTCCTTCTGTAAGCGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAATGCCTGGGGACCTGATGATAAAGCTGGTCAAAATGCATCTGGTGTAGATGAAACCAATGAATTCTCAAGTGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCAATATTTATCCAAGCCTCACATTATGGAGCAACCAATTACTATAGATGCAACTTCACCTGAGTTGCACTGTCCTGGATTCGACATTGAAGATGACCTCTATGAGAATTTGAATATGGATGAAGATAGTTTGAATATTGAAAATTATGAAGAACTATTTGGTGTATCTCTCAGTTTTTCTGAAGAATTGCTAGAGAATGGTGGTATTGATAGCTTGTTCAGGATGAAAAACTTATCTGCCGCTAAATCTGGTTGCCCTGGTGCAGCTGCTGCAGAGAGGGCGTCAGTTGGTTTAGTTAATAATACGACGCGGCCAGCAACCAGTAATGCAGCATCTACAGATTCCGTGATGAGTGCGAAGACTGAACCGCTTCTTTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCCTTTTCTGGCATGACTGGAGAGTGTAGCGCAGGAGAACATCAAGACTGTGGAGCTTCATCAATGATTCTAATGGGAGAGCCTCCATGGTGTTCTATGACCACTGAAAGTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTAATGCGCTATAAGGAAAAGAAGAAAGCTCGACAGTTTGAAAAGAAGGTGAGATACGCCTCTCGCAAAGTGAGGGCCGATACTAGAAGGCGTGTCAAGGGCCGTTTTGTTAAAGCTGGAGAAGCTTATGACTATGATCCACTGAGTCAAACCAGAAGCTACTGA 1227 43.68 MGYICDFCARERAVVYCRSDSAALCLSCDRNVHSANALSKRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYAGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLPSVSDACEQELGLMSIAENSAVNAWGPDDKAGQNASGVDETNEFSSVDKSIWYGSSSMPQYLSKPHIMEQPITIDATSPELHCPGFDIEDDLYENLNMDEDSLNIENYEELFGVSLSFSEELLENGGIDSLFRMKNLSAAKSGCPGAAAAERASVGLVNNTTRPATSNAASTDSVMSAKTEPLLCYNNKQEHSSLSFSGMTGECSAGEHQDCGASSMILMGEPPWCSMTTESSFQSSNRSDAVMRYKEKKKARQFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLSQTRSY 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3123089 3128063 - Hsped.02g03270.1 Hepe02g0327 561828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0327 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 398 - -
Hepe02g0327 408 Pfam B-box zinc finger 4 45 IPR000315 GO:0008270(InterPro)
Hepe02g0327 408 ProSiteProfiles CCT domain profile. 351 393 IPR010402 GO:0005515(InterPro)
Hepe02g0327 408 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Hepe02g0327 408 CDD Bbox1_BBX-like 4 47 IPR049808 -
Hepe02g0327 408 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Hepe02g0327 408 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Hepe02g0327 408 Pfam CCT motif 351 393 IPR010402 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0327 Hepe-Chr2:3123089 Hepe08g0983 Hepe-Chr8:9285986 7.88e-09 dispersed
Hepe10g1359 Hepe-Chr10:49813523 Hepe02g0327 Hepe-Chr2:3123089 4.16e-06 dispersed
Hepe01g1157 Hepe-Chr1:76692271 Hepe02g0327 Hepe-Chr2:3123089 4.61e-14 transposed
Hepe05g1156 Hepe-Chr5:56787483 Hepe02g0327 Hepe-Chr2:3123089 1.24e-17 transposed
Hepe08g0483 Hepe-Chr8:4252360 Hepe02g0327 Hepe-Chr2:3123089 2.05e-33 transposed
Hepe02g0327 Hepe-Chr2:3123089 Hepe08g0372 Hepe-Chr8:3343839 1.67e-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54953 PF06203 CCT 2.50E-16 CL0281 Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0327 - - - 0.0