Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0327 ATGGGTTACATATGTGATTTCTGTGCACGTGAAAGAGCGGTTGTTTACTGCCGATCCGATTCTGCTGCTTTGTGCTTATCTTGTGACCGTAATGTTCACTCTGCCAACGCGTTGTCAAAGCGCCACTCAAGAACGTTGTTATGTGATCGGTGCCATTCACAAGCAGCATTTGTTAGATGTCCTGAAGAGAATATTTCACTTTGTCAAAATTGTGATTATGCAGGGCATAGCTCATCTGCCTCCATTTCGTCTCGAAAGAGGCAACCAATCAATTGTTACTCGGGTTGCCCGACGGCTGCGGAGCTCTCGTCTATCTGGTCATTTGTTCTAGATCTTCCTTCTGTAAGCGACGCTTGTGAGCAAGAATTAGGATTGATGAGCATTGCCGAAAATAGTGCAGTAAATGCCTGGGGACCTGATGATAAAGCTGGTCAAAATGCATCTGGTGTAGATGAAACCAATGAATTCTCAAGTGTGGATAAATCAATTTGGTATGGGTCCTCTTCAATGCCTCAATATTTATCCAAGCCTCACATTATGGAGCAACCAATTACTATAGATGCAACTTCACCTGAGTTGCACTGTCCTGGATTCGACATTGAAGATGACCTCTATGAGAATTTGAATATGGATGAAGATAGTTTGAATATTGAAAATTATGAAGAACTATTTGGTGTATCTCTCAGTTTTTCTGAAGAATTGCTAGAGAATGGTGGTATTGATAGCTTGTTCAGGATGAAAAACTTATCTGCCGCTAAATCTGGTTGCCCTGGTGCAGCTGCTGCAGAGAGGGCGTCAGTTGGTTTAGTTAATAATACGACGCGGCCAGCAACCAGTAATGCAGCATCTACAGATTCCGTGATGAGTGCGAAGACTGAACCGCTTCTTTGTTATAACAATAAGCAAGAGCACTCCAGCCTATCCTTTTCTGGCATGACTGGAGAGTGTAGCGCAGGAGAACATCAAGACTGTGGAGCTTCATCAATGATTCTAATGGGAGAGCCTCCATGGTGTTCTATGACCACTGAAAGTTCCTTCCAGTCATCTAATCGTAGCGATGCTGTAATGCGCTATAAGGAAAAGAAGAAAGCTCGACAGTTTGAAAAGAAGGTGAGATACGCCTCTCGCAAAGTGAGGGCCGATACTAGAAGGCGTGTCAAGGGCCGTTTTGTTAAAGCTGGAGAAGCTTATGACTATGATCCACTGAGTCAAACCAGAAGCTACTGA 1227 43.68 MGYICDFCARERAVVYCRSDSAALCLSCDRNVHSANALSKRHSRTLLCDRCHSQAAFVRCPEENISLCQNCDYAGHSSSASISSRKRQPINCYSGCPTAAELSSIWSFVLDLPSVSDACEQELGLMSIAENSAVNAWGPDDKAGQNASGVDETNEFSSVDKSIWYGSSSMPQYLSKPHIMEQPITIDATSPELHCPGFDIEDDLYENLNMDEDSLNIENYEELFGVSLSFSEELLENGGIDSLFRMKNLSAAKSGCPGAAAAERASVGLVNNTTRPATSNAASTDSVMSAKTEPLLCYNNKQEHSSLSFSGMTGECSAGEHQDCGASSMILMGEPPWCSMTTESSFQSSNRSDAVMRYKEKKKARQFEKKVRYASRKVRADTRRRVKGRFVKAGEAYDYDPLSQTRSY 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3123089 3128063 - Hsped.02g03270.1 Hepe02g0327 561828

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0327 408 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 398 - -
Hepe02g0327 408 Pfam B-box zinc finger 4 45 IPR000315 GO:0008270(InterPro)
Hepe02g0327 408 ProSiteProfiles CCT domain profile. 351 393 IPR010402 GO:0005515(InterPro)
Hepe02g0327 408 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Hepe02g0327 408 CDD Bbox1_BBX-like 4 47 IPR049808 -
Hepe02g0327 408 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Hepe02g0327 408 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Hepe02g0327 408 Pfam CCT motif 351 393 IPR010402 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0327 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0327 Hepe-Chr2:3123089 Hepe08g0983 Hepe-Chr8:9285986 7.88e-09 dispersed
Hepe10g1359 Hepe-Chr10:49813523 Hepe02g0327 Hepe-Chr2:3123089 4.16e-06 dispersed
Hepe01g1157 Hepe-Chr1:76692271 Hepe02g0327 Hepe-Chr2:3123089 4.61e-14 transposed
Hepe05g1156 Hepe-Chr5:56787483 Hepe02g0327 Hepe-Chr2:3123089 1.24e-17 transposed
Hepe08g0483 Hepe-Chr8:4252360 Hepe02g0327 Hepe-Chr2:3123089 2.05e-33 transposed
Hepe02g0327 Hepe-Chr2:3123089 Hepe08g0372 Hepe-Chr8:3343839 1.67e-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g737 . Blo15g00433 . . Bpe12g00169 Bpe15g00764 Bma03g00658 Bma08g00690 . Cmo19g00853 Cma02g00242 Cma20g00703 . . . Cpe15g00673 Cpe04g00659 Bhi05g01505 . . Lac12g0415 Hepe02g0327 . . Cla02g00307 Cam02g0316 Cec02g0317 Cco02g0319 Clacu02g0307 Cmu02g0306 Cre02g0639 Cone3ag1271 . Cone8ag1358 Cone12ag1303 . Csa07g00235 Chy11g00733 Cme01g00573 . Blo13g00448 Bda14g00661 . . Bpe07g00668 Bma02g01294 Bma12g00873 . Cmo02g00244 . . Cma19g00837 Car11g01444 Car19g00649 . Cpe05g01383 Bhi10g01288 . . . Hepe08g0372 . . . . . . . . . Lsi11g01330 Csa06g00975 Chy01g00545 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hepe09g0511 . 20 370 C2C2-CO-like Transcription Factor Family AT5G24930 50.3 1.9e-56 216.9
Hepe10g0202 . 1 241 C2C2-CO-like Transcription Factor Family AT5G24930 58.8 4.6e-47 185.7
Hepe02g0327 . 1 408 C2C2-CO-like Transcription Factor Family AT3G07650 54.9 1.4e-86 317.0
Hepe08g0372 . 69 278 C2C2-CO-like Transcription Factor Family AT3G07650 54.6 4.0e-46 182.6
Hepe02g0327 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 2.4e-83 306.2
Hepe08g0372 . 87 278 C2C2-CO-like Transcription Factor Family AT5G48250 55.7 1.8e-46 183.7
Hepe02g0327 . 1 408 C2C2-CO-like Transcription Factor Family AT5G48250 53.8 2.4e-83 306.2
Hepe08g0372 . 87 278 C2C2-CO-like Transcription Factor Family AT5G48250 55.7 1.8e-46 183.7
Hepe02g0478 . 1 203 C2C2-CO-like Transcription Factor Family AT1G75540 58.0 8.8e-53 204.5
Hepe01g1643 . 1 215 C2C2-CO-like Transcription Factor Family AT1G75540 50.9 4.4e-52 202.2
Hepe08g0983 . 1 205 C2C2-CO-like Transcription Factor Family AT1G75540 52.4 4.0e-45 179.1
Hepe07g0738 . 1 184 C2C2-CO-like Transcription Factor Family AT2G21320 63.0 6.8e-57 217.2
Hepe04g1574 . 1 128 C2C2-CO-like Transcription Factor Family AT2G21320 74.2 1.2e-50 196.4
Hepe07g0738 . 1 183 C2C2-CO-like Transcription Factor Family AT4G38960 64.5 4.6e-59 224.6
Hepe04g1574 . 1 166 C2C2-CO-like Transcription Factor Family AT4G38960 60.8 1.0e-50 196.8
Hepe02g0478 . 1 201 C2C2-CO-like Transcription Factor Family AT4G39070 58.4 2.2e-53 206.1
Hepe08g0983 . 1 208 C2C2-CO-like Transcription Factor Family AT4G39070 52.5 1.4e-44 176.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000824 1 8 2 4 3 2 4 2 2 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 18 2 1 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54953 PF06203 CCT 2.50E-16 CL0281 Hepe TF