Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0397 ATGCAAGTTTCAATGGCGCTGTTATTGGGTTTTTGGGTCGTTATGTCCCTCTCCAGGTCACTCTATTTGAGTTCAGTTGCTGAAAAAAGAAGTCGGGCAATTCATATTGCGGATCTAGAAGAGTTACTAAGTGGTTGCACACGGTTGGAAGCATTAACCCTGATGTTTGATGTCTCATTTTTCCTTCGTCAAAATTTTGCTCGAGTCTGGGCTATGGCCTCAGAAAAACTAACTTCTCTTGAGATCGGCTGTATCTATTCCGTTACAGTCACCGAACTGCTTAGCCAAAATCCGGGTATCTGTAGTCCTATGAATCGTGTTGGCCCATCCATGTGGCCTAACATTGAAAAGTTGTGCCTTTCAGTGGACTATATAACTGATGCTATGGTTGGTGCAATATCAAATGGTCTTGTCTCCTTGATTCATTTGGAACTACAAGATGCCCCCATCATTGAACCAAGATTTTCTTTTGATCTGACCAACGTTGGCCTTCAACAAATCAATCACCTATCAAAATTGAAGCATCTCTCTTTGGTACGAAGTCAGGAATTTCTTGTAACTTATTTTAGAAGAGTAAACGATCTCGGGATCCTCTTAATGGCTGATGGATGTGCTGACCTGGAAAGCATCTGTCTCGGAGGCTTTTGTCGTGTTACAGACACAGGGTTCAGGACAATTCTGCACACATTCTCCAATTTAAACAAGCTTAGAGTGTTCCATGGAATCCAATTAACCCATCTAGTTTTTCACGACATATCTGCTACTTCTCTTTCCTTGAAACATGTTAGCTTAAGATGGTGCAGTCTTCTAACTAACGATGCCGTAAAAAACTTATCATTGAACAAGGATCTAAGTTTTCTTGACTTGAGAGATTGCAGAAGCCTTCGGGATAAAGCGCTTCAAGCGATCGGTACTATTCCAAAATTGAAGACCTTGCTTTTGGACGGGTCCGATATTAGTGATGCAGGATTGTCTCACTTAAGACCCTTGATTATGAGCTCATTAGTTTGCTTGTCTGTTAGAGGTTGCAAGAAGCTTACAGATAAGTCCATCACTGTTCTATTTGATGGCTTATCTAAAATAGAACTGCAAGAATTAGATCTTTCCAACCTTCCTTACCTATCTGATGCTGCAGTTTTACAGCTGACCAGAAGCAGGTTTGCGATATCCGAACTCCGGATGCGTCAATGCCCTCTCATTGGTGATATCTCGGTCATGGCATTGGCCTCAATGCAGGTCAATGAAGACCAACGACATGGGAGTAGCCTGCGGCTGTTGGATTTGTTCAACTGTGGTGGCCTTACACAGCTCTCATACAAGTGGCTAAAGAACCCATACTTTCCAAGGTTGAGATGGTTGGGTGTGACAGGAACTCTAAATCGCGACTTGGTAGATGCTTTAACCCGAAGTAGACCGCTCTTGCACGTAGCGTGCCATGGCGAGGAGTTAGGAGTCGACCATTGGGATAGGTCAGATGTTCTCTATATGCACCACTACGACGAGGTGGATGAATTCGAACAGTGGCTCTTTGATGGTGAGGTCGGGAACGATGGCGATGATGACGATGATGACGATATGGCAGATGCTGAAAATGATGCAGAGCTAATTCTATGA 1614 43.43 MQVSMALLLGFWVVMSLSRSLYLSSVAEKRSRAIHIADLEELLSGCTRLEALTLMFDVSFFLRQNFARVWAMASEKLTSLEIGCIYSVTVTELLSQNPGICSPMNRVGPSMWPNIEKLCLSVDYITDAMVGAISNGLVSLIHLELQDAPIIEPRFSFDLTNVGLQQINHLSKLKHLSLVRSQEFLVTYFRRVNDLGILLMADGCADLESICLGGFCRVTDTGFRTILHTFSNLNKLRVFHGIQLTHLVFHDISATSLSLKHVSLRWCSLLTNDAVKNLSLNKDLSFLDLRDCRSLRDKALQAIGTIPKLKTLLLDGSDISDAGLSHLRPLIMSSLVCLSVRGCKKLTDKSITVLFDGLSKIELQELDLSNLPYLSDAAVLQLTRSRFAISELRMRQCPLIGDISVMALASMQVNEDQRHGSSLRLLDLFNCGGLTQLSYKWLKNPYFPRLRWLGVTGTLNRDLVDALTRSRPLLHVACHGEELGVDHWDRSDVLYMHHYDEVDEFEQWLFDGEVGNDGDDDDDDDMADAENDAELIL 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3784909 3788632 + Hsped.02g03970.1 Hepe02g0397 561898

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0397 537 Gene3D Ribonuclease Inhibitor 317 483 IPR032675 -
Hepe02g0397 537 MobiDBLite consensus disorder prediction 516 537 - -
Hepe02g0397 537 SUPERFAMILY RNI-like 109 502 - -
Hepe02g0397 537 Gene3D Ribonuclease Inhibitor 243 316 IPR032675 -
Hepe02g0397 537 PANTHER UNCHARACTERIZED 31 329 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
Hepe02g0397 537 SMART LRR_CC_2 256 281 IPR006553 -
Hepe02g0397 537 SMART LRR_CC_2 360 385 IPR006553 -
Hepe02g0397 537 SMART LRR_CC_2 386 411 IPR006553 -
Hepe02g0397 537 SMART LRR_CC_2 332 357 IPR006553 -
Hepe02g0397 537 SMART LRR_CC_2 204 229 IPR006553 -
Hepe02g0397 537 SMART LRR_CC_2 282 306 IPR006553 -
Hepe02g0397 537 Gene3D Ribonuclease Inhibitor 15 242 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0397 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0397 Hepe-Chr2:3784909 Hepe10g1937 Hepe-Chr10:56238404 3.85e-58 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g222 . . . . . . . . . . . . . . . . . Bhi05g01664 Tan02g0638 . . Hepe02g0397 . . Cla02g00399 Cam02g0404 Cec02g0404 Cco02g0419 Clacu02g0407 Cmu02g0403 Cre02g0737 Cone12ag1252 Cone8ag1307 . . . Csa07g00134 . Cme01g01214 . . Bda15g01019 . Bpe15g00796 . . Bma08g00739 . . . Cma11g01358 . Car11g01391 . . . . . . . . . . . . . . . . . Lsi11g01228 . Chy01g00652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006869 2 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 2 37