Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0399 ATGGATTCGCTGAAGAAATCCTTCAAAGGCAATGTATCTTTCAAGCACACCAGGAAGATTTCTGCCGGCGGAGGAGCCGGTACCAGCGAAGTAATCAACCACGAGGAGCTCCCCATTCTCGTCGATCACAAACCTGCCGATCATCTCATTCGTCACAGCTCTGATCCCTCTGACCGCACCGAGGTCATTCTCAAGATCGACGATGGCGGTTCTTCCACATCTGTCACCAGATCCATGGAGTCTGTCGGCAATGGCGGGAAGGTTTGGCGGGAATCCAGGTACGATTTCTGGAATAATAATGATACTATTGGAATTGGGGAAAGTGCGAGTAGGGCTAGTGGAGCCAGAATGAGTGATTGTACCGGTGATTCGAATGAGGCTTTTGAATTTGTTCAGCGTGGTAATTATGGTGCTGTTCATGAAGATCCACCTACCAAATTGATTGGGGAGTTTCTTCATAAGCAGAAAATTAGAGGGGATACGACTTTGGATATGGATTTGGAAATGGAGGAGCTGCGGCAGGATAGGAATATATCTCCGATGGGGGAGTCACCCTTGAGTCAAACTTCTAAGGATGTTAAGGTTTCCTTTCACCGTGATTCGCCTGAAATTACTAGCAGCGAGTCGATTCGGAGGCGGTACAGAGACTCCCGCGAACTGCAAGAAGAGTATAATAAAGGAGGGCAATCGCCATGGCAACAACAATTGCAACATGAACATGAACGACATTTATCTCCGAATGTTTCTGGTGTTCAAAATGACTCTGCCGAGAATTTGAGGTGCGCATCGAATTTGTCTTTTCAGAGCGAGATTTCGTTCCAGACTAATAGATCCCATTTGCTGAGGGCGAAAACCAAGTCGAGATTGATAGACCCGCCTACCGAACCAGACCGTCTCTCTGGCCTCATTCCCAGATCAGGACAGCTACGATCGGGGTTTCTTGGCGACGACGAAGACGATCCCTTTCTGGAGGAAGATCTTCCAGACGATTTTAAAAGGGGTAATTTCAGTTTCCTAACCGTTCTGCAATGGGTTAGTTTGGTTCTAATCATTGGCGCTTTAGTTTGTACTCTTTCATTTCCTTATTTGAGGGCAAGGAGCCTATGGGAGTTGGATATATGGAAATGGGAGATGTTGGTTTTGGTACTGATTTGTGGACGTTTGACGCTCTCAGGGCCACCGCAGATTGAAATTAAGAAGAACGAGGAACAAGAGGATAGGCTTGCAGATGAAGTCCAAAAATTACAGAATGCAGGAATTAACATACCCCCTGATCTCAAGGCAGCAACCTTCTCTTCTTCTATAAAGAGTGGAAGGGCAGTAGGCAACGGAATGACCCCAAAAAGTTCTCGTGGAAAAAGTAGCAAATTCTCTCGAACACTTACCAAAAATGGAAACGACGGTATAACGATTGATCATTTGCACAAACTAAGTCCGAAGAATGTATCTGCCTGGAATATGAAGAGGTTGTTGAACATTGTCCGATATGGTAGTATTTCTACACTGGATGAGCAGATACCGGGGCCGTGTGTTGATGATGAATCTACTAAGGAGATCAAAAGTGAGCGCGAGGCAAAGGCTGCAGCAAAGAAGATTTTTCATAACGTGGCTCGGCGTGGGTTTAAGTACATATACCTGGATGACTTAATGCGGTTCATGAAAGAAGACGAGGTTTTTAAAACAATGAGTCTCTTTGAAGGAGCAGTTGAAACACGGAGGATAAGCAAATCTTCCTTGAAAAATTGGGTGTGTCAATGTCATTACTACAATTACATTGAAGGCAACAAAGAACACTGGTGTCCTTCCCCTATGATTATTTTCAGGGATGTTGATGGTTTGCATAGGCTGAAATTGGCAGTTTGGCTGTGCCACAGAATGAACCACCAAGACTCGGGGGAAAGATGGGCTCGGAGGTCCATCTTGGTCGAAGAGGTCGTGAAGGTCTGTCAAGAGCTTGACATTCAGTATCGTATGTTGCCCCTCGATATCAATATCCGTTCAATGCCTACTTCTGCACCCTCCATTGGCTTCCCACCTAATTGA 2043 45.57 MDSLKKSFKGNVSFKHTRKISAGGGAGTSEVINHEELPILVDHKPADHLIRHSSDPSDRTEVILKIDDGGSSTSVTRSMESVGNGGKVWRESRYDFWNNNDTIGIGESASRASGARMSDCTGDSNEAFEFVQRGNYGAVHEDPPTKLIGEFLHKQKIRGDTTLDMDLEMEELRQDRNISPMGESPLSQTSKDVKVSFHRDSPEITSSESIRRRYRDSRELQEEYNKGGQSPWQQQLQHEHERHLSPNVSGVQNDSAENLRCASNLSFQSEISFQTNRSHLLRAKTKSRLIDPPTEPDRLSGLIPRSGQLRSGFLGDDEDDPFLEEDLPDDFKRGNFSFLTVLQWVSLVLIIGALVCTLSFPYLRARSLWELDIWKWEMLVLVLICGRLTLSGPPQIEIKKNEEQEDRLADEVQKLQNAGINIPPDLKAATFSSSIKSGRAVGNGMTPKSSRGKSSKFSRTLTKNGNDGITIDHLHKLSPKNVSAWNMKRLLNIVRYGSISTLDEQIPGPCVDDESTKEIKSEREAKAAAKKIFHNVARRGFKYIYLDDLMRFMKEDEVFKTMSLFEGAVETRRISKSSLKNWVCQCHYYNYIEGNKEHWCPSPMIIFRDVDGLHRLKLAVWLCHRMNHQDSGERWARRSILVEEVVKVCQELDIQYRMLPLDINIRSMPTSAPSIGFPPN 680
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3826959 3831455 + Hsped.02g03990.1 Hepe02g0399 561900

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0399 680 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 389 585 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Hepe02g0399 680 Coils Coil 398 421 - -
Hepe02g0399 680 MobiDBLite consensus disorder prediction 439 459 - -
Hepe02g0399 680 MobiDBLite consensus disorder prediction 175 252 - -
Hepe02g0399 680 MobiDBLite consensus disorder prediction 193 223 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0399 K22048 - - csv:101207426 496.893
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0399 Hepe-Chr2:3826959 Hepe09g0905 Hepe-Chr9:9063865 1.82e-21 dispersed
Hepe02g0399 Hepe-Chr2:3826959 Hepe08g0320 Hepe-Chr8:2865666 1.28e-178 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g220 . . . . . . . . . . . Cma20g00732 . Car20g00632 . Cpe04g00610 . Bhi05g01668 . . . Hepe02g0399 . . . . . . . . . . Cone8ag1305 . . Lsi10g00812 Csa07g00130 . . Blo04g00586 . . Bda14g00631 . . Bma03g00619 . . . Cmo20g00729 . . Car11g01388 . . . . . . . . . . Cla02g01085 Cam02g1162 Cec02g1160 Cco02g1208 Clacu02g1153 Cmu02g1115 Cre02g1419 Lsi11g01224 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001937 2 3 2 2 2 2 2 2 2 2 2 2 2 2 2 1 2 5 2 2 2 2 2 2 2 3 2 5 3 1 67