Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0402 ATGGCCATTTTGGTGATGATTCGCCGGAGAATTTGGTCATCAAAGACCTTTCACGAAGCTGCTTTAACAATTTTCAAACCTCAGCAGCATGTTCATCGTCGTCCAGCTCTGTTCAACATTGTTTTTCAGTCGAAACAGAGTCGTTTCTCTTCTCATTCTTCGAGAGCCAACAGTTTTCAGGCTCCGGAATTCTATTCTCTGAACAAGAACATGTCTTTTTTGATTCGAACAGGCCGAATAATCGAAGCGAGGGAGTTGTTCGATAGCATTAAGCATCGGAATACGATTACTTGGAATACAATGATCACAGGGTATGTAAAAAGGAGAGAGATGATCAATGCACGCCAGTTGTTCGACGAAATGCCTAACAGAGATATTGTGTCGTGGAACTTGATGTTATCTGGTTATATATCTTGTGGTGGAAGGTACATTGATAGCGCACGGAATCTGTTCGATAAAATGCCGGAAAGAGATTGTGTTTCATGGAACACGATGGTAAGTGGGTATGCTAAGAATGGGATGATGGATAAAGCAGAGGAGCTTTTCGATTACATGCCTGAACGTAATGTTGTCTCGTGGAATGCCATGGTTTCTGGTTATTTAATGAATGGTTTTGTGGAGAAAGCTATTGAGTTCTTTAAAATGATGCCAGAACGAGACTCTGCTTCTCTTAGTGCATTGGTTTCTGGTCTGATTCAGAATGAGAAGTTGGTTGAAGCTGAAAGGATTTTGCTTCAATATGGTGGGAGTGATGGAAGAGGGGATTTAGTTCATGCTTATAATACTTTAATTGCTGGATATGGTCAGAAAGGAATGATCCAAGAAGCCCGGAAACTGTTTGATTGCATCCCTTTGCGTCGTGAACGACGGGAAGATGAAAGTGGCAACTCTGGGAGGAATGTGGTTTCATGGAACTCTATGATTATGAGCTATGTGAGAGCTGGTGACATAGTCTCTGCCCGAGAACTATTCGACGAAATGGTTGAGCGAGATACTTTTTCGTGGAACACTATGATCAGCGGCTATGTTCAGATCTTGGATATGAAAGAGGCCTCGAATCTGTTCGGTAGAATGCCAAATCCCGATACCCTTTCGTGGAATATGATGATATCTGGGTGTGCTGAGATAGGTAGTTTGAAACTAGCTCATGATTTGTTCAAAAGGATGCCAGAGAAAAGCCTTGTCTCGTGGAATTCCATGATATCTGGCTGTGAGAAAAATGAAGACTATAAAGGAGCAATTAACATCTTTTTGCAGATGCAACTTGAGGGTAAGAAACCAGATAGGCACACTTTATCATCAATTCTTAGTGCTTGTGCTGGGATGGTAGATCTGCCTTTGGGAACTCAGATTCATCAACTAGTTACAAAAGCATTTATTGCAGATTTGCCCATAAACAACTCTCTTGTTACAATGTACTCGAGATGTGGAGAAATCGTGGAGGCACAGACGGTTTTCGATGAAATGCATCTGCAGAGAGATGTAATTTCGTGGAATGCGATGATCGGCGGGTATGCCTCTCATGGCTTTGCAACAGAGGCGCTTCAACTTTTCAAGTTGATGAAACAATGTAATGTGCAGCCCTCTTATATCACATTCATTTCTGTTCTGAATGCTTGTGCTAATGCTGGATTGATTGAGGAAGGTAGGAGAGAATTCAACTCCATGGTTAACACGCACGGTATCGAACCAAGAGTCGAACACTATGCTGCCCTTGTCGACATTGTCGGTCGACACGGGCAGCTTGAAGAAGCAATGAGTTTGATCAATAGCATGCCATGTGAACCGGATAAAGCAGTGTGGGGTGCATTACTGGGTGCTTGTAGGGTGCACAGCAATGTCGAGATGGCACGAGTGGCAGCTGAAGCTTTAATGAAGCTCGAACCCGAAAGCTCAGCTCCATACGTGTTGCTATATAATATGTATGCGGATGTGGGACGATGGAATGATGCTGCTGAAGTGAGAACGATGATGGAGAAGAACAATATTCAAAAGGAAGCTGGATATAGTCGGGTGGATTCTAATTGCTAA 2031 42.89 MAILVMIRRRIWSSKTFHEAALTIFKPQQHVHRRPALFNIVFQSKQSRFSSHSSRANSFQAPEFYSLNKNMSFLIRTGRIIEARELFDSIKHRNTITWNTMITGYVKRREMINARQLFDEMPNRDIVSWNLMLSGYISCGGRYIDSARNLFDKMPERDCVSWNTMVSGYAKNGMMDKAEELFDYMPERNVVSWNAMVSGYLMNGFVEKAIEFFKMMPERDSASLSALVSGLIQNEKLVEAERILLQYGGSDGRGDLVHAYNTLIAGYGQKGMIQEARKLFDCIPLRRERREDESGNSGRNVVSWNSMIMSYVRAGDIVSARELFDEMVERDTFSWNTMISGYVQILDMKEASNLFGRMPNPDTLSWNMMISGCAEIGSLKLAHDLFKRMPEKSLVSWNSMISGCEKNEDYKGAINIFLQMQLEGKKPDRHTLSSILSACAGMVDLPLGTQIHQLVTKAFIADLPINNSLVTMYSRCGEIVEAQTVFDEMHLQRDVISWNAMIGGYASHGFATEALQLFKLMKQCNVQPSYITFISVLNACANAGLIEEGRREFNSMVNTHGIEPRVEHYAALVDIVGRHGQLEEAMSLINSMPCEPDKAVWGALLGACRVHSNVEMARVAAEALMKLEPESSAPYVLLYNMYADVGRWNDAAEVRTMMEKNNIQKEAGYSRVDSNC 676
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3847853 3850234 + Hsped.02g04020.1 Hepe02g0402 561903

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0402 676 SUPERFAMILY TPR-like 299 645 IPR011990 GO:0005515(InterPro)
Hepe02g0402 676 Gene3D Tetratricopeptide repeat domain 36 253 IPR011990 GO:0005515(InterPro)
Hepe02g0402 676 Gene3D Tetratricopeptide repeat domain 347 454 IPR011990 GO:0005515(InterPro)
Hepe02g0402 676 Gene3D Tetratricopeptide repeat domain 254 345 IPR011990 GO:0005515(InterPro)
Hepe02g0402 676 FunFam Pentatricopeptide repeat-containing protein mitochondrial 446 552 - -
Hepe02g0402 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 300 334 IPR002885 -
Hepe02g0402 676 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 178 315 - -
Hepe02g0402 676 FunFam Pentatricopeptide repeat-containing protein 124 188 - -
Hepe02g0402 676 NCBIfam pentatricopeptide repeat 259 281 IPR002885 -
Hepe02g0402 676 NCBIfam pentatricopeptide repeat 496 529 IPR002885 -
Hepe02g0402 676 NCBIfam pentatricopeptide repeat 302 331 IPR002885 -
Hepe02g0402 676 NCBIfam pentatricopeptide repeat 395 428 IPR002885 -
Hepe02g0402 676 NCBIfam pentatricopeptide repeat 160 191 IPR002885 -
Hepe02g0402 676 NCBIfam pentatricopeptide repeat 191 220 IPR002885 -
Hepe02g0402 676 NCBIfam pentatricopeptide repeat 96 127 IPR002885 -
Hepe02g0402 676 NCBIfam pentatricopeptide repeat 365 394 IPR002885 -
Hepe02g0402 676 Pfam E motif 611 672 IPR046848 -
Hepe02g0402 676 FunFam Pentatricopeptide repeat-containing protein 299 360 - -
Hepe02g0402 676 Pfam PPR repeat family 393 440 IPR002885 -
Hepe02g0402 676 Pfam PPR repeat family 493 542 IPR002885 -
Hepe02g0402 676 Pfam PPR repeat family 93 125 IPR002885 -
Hepe02g0402 676 Gene3D Tetratricopeptide repeat domain 455 555 IPR011990 GO:0005515(InterPro)
Hepe02g0402 676 Gene3D Tetratricopeptide repeat domain 556 665 IPR011990 GO:0005515(InterPro)
Hepe02g0402 676 FunFam Pentatricopeptide repeat-containing protein 553 675 - -
Hepe02g0402 676 Pfam PPR repeat 333 358 IPR002885 -
Hepe02g0402 676 Pfam PPR repeat 160 190 IPR002885 -
Hepe02g0402 676 Pfam PPR repeat 569 593 IPR002885 -
Hepe02g0402 676 Pfam PPR repeat 191 219 IPR002885 -
Hepe02g0402 676 Pfam PPR repeat 127 159 IPR002885 -
Hepe02g0402 676 Pfam PPR repeat 259 282 IPR002885 -
Hepe02g0402 676 Pfam PPR repeat 467 490 IPR002885 -
Hepe02g0402 676 Pfam PPR repeat 302 330 IPR002885 -
Hepe02g0402 676 Pfam PPR repeat 365 392 IPR002885 -
Hepe02g0402 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 494 528 IPR002885 -
Hepe02g0402 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 362 396 IPR002885 -
Hepe02g0402 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 94 128 IPR002885 -
Hepe02g0402 676 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 158 192 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0402 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0402 Hepe-Chr2:3847853 Hepe04g0352 Hepe-Chr4:51268821 8.57e-68 dispersed
Hepe02g0402 Hepe-Chr2:3847853 Hepe04g0550 Hepe-Chr4:58177463 1.12e-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g213 . . . . . . . . . Cmo11g01756 . . . . . . . Bhi05g01672 . . . Hepe02g0402 . . Cla02g00403 . . . . . . . Cone8ag1304 . . . Csa07g00127 . . . . . . Bpe15g00799 . Bma03g00618 . . . . Cma11g01362 . Car11g01386 . . . . . . . . . . . . . . . . . Lsi11g01222 . Chy01g00656 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014695 0 1 0 1 1 0 1 1 0 1 0 0 1 0 1 1 0 1 0 0 1 1 1 1 0 1 1 1 1 1 19