Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0408 ATGGGTTTCGAACAAAACAATCACGATGCTGAGGAGGGAACGCTGGAGATTGGCATGGAATATAGAACGGTCTCTGGTGTTGCTGGTCCTTTGGTTATTCTGGACAAAGTCAAGGGACCTAAATTTCAAGAGATTGTTAATATTCGTCTAGGAGATGGAACAACCAGACGTGGTCAAGTCCTGGAAGTTGATGGGGAGAAAGCTGTTGTCCAGGTATTTGAAGGGACATCTGGAATTGATAACAAGTATACGACTGTGCAATTTACCGGAGAGGTTTTGAAAACTCCAGTCTCCTTGGACATGCTTGGGCGAATTTTTAATGGTTCTGGAAAACCCATTGATAATGGTCCTCCTATCTTGCCTGAGGCTTACTTGGATATTTCTGGGAGTTCTATAAACCCCAGTGAGAGAACTTATCCCGAAGAGATGATACAGACTGGAATTTCTACAATTGATGTCATGAATTCCATTGCTAGAGGTCAAAAAATCCCACTTTTCTCAGCTGCAGGTCTTCCTCACAATGAAATTGCTGCCCAGATATGTCGACAGGCTGGCTTGGTAAAGCGGTTGGAGAAATCCAACGATCTTCTTGAGGGTGGTGGTGAGGAGGACAACTTTGCCATTGTTTTTGCCGCTATGGGTGTTAACATGGAGACTGCCCAATTTTTTAAACGTGATTTTGAGGAGAATGGTTCAATGGAGAGAGTGACCCTATTTCTGAACCTGGCTAATGATCCTACAATTGAGCGTATTATCACTCCTCGTATTGCTCTTACCACTGCTGAATATTTGGCTTATGAATGTGGGAAGCATGTTCTCGTCATACTGACAGATATGAGTTCTTATGCTGATGCTCTTCGAGAGGTGTCTGCTGCACGAGAGGAAGTGCCTGGAAGGCGTGGATACCCTGGTTATATGTATACCGATCTTGCTACAATCTATGAACGAGCTGGACGTATTGAAGGACGTAAAGGATCCATCACTCAAATCCCAATCCTCACTATGCCAAACGATGATATTACACATCCTACTCCCGATCTTACTGGCTATATTACCGAGGGACAGATCTACATTGATAGGCAGCTCTACAACAGACAGATATACCCACCAATTAATGTCCTTCCTTCATTGTCTCGTCTTATGAAGAGTGCCATTGGTGAGGGAATGACCCGTAGGGATCATGCTGATGTATCCAACCAGCTCTATGCAAATTATGCAATTGGGAAGGATGTTCAGGCAATGAAAGCCGTGGTCGGAGAAGAAGCACTCTCTTCTGAGGATCTGCTCTATTTGGAGTTTTTGGACAAATTTGAGAGGAAGTTTGTCTCTCAAGGCGCTTACGATACTCGAAATATTTTCCAATCACTCGATCTGGCATGGACACTGCTTCGTATTTTCCCTCGCGAACTTCTCCACCGTATTCCTGCAAAAACTCTTGATCAGTTTTACAGCCGAGAATCTGCAAATTGA 1470 43.95 MGFEQNNHDAEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKFQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSNDLLEGGGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLYNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVSQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDQFYSRESAN 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3895372 3900594 - Hsped.02g04080.1 Hepe02g0408 561909
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0408 489 Hamap V-type ATP synthase beta chain [atpB]. 18 487 IPR022879 -
Hepe02g0408 489 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 94 384 IPR027417 -
Hepe02g0408 489 CDD V_A-ATPase_B 92 386 - -
Hepe02g0408 489 CDD ATP-synt_V_A-type_beta_C 388 482 - -
Hepe02g0408 489 FunFam V-type proton ATPase subunit B, brain 29 489 - -
Hepe02g0408 489 PIRSF V-ATPsynth_beta/V-ATPase_B 11 489 IPR022879 -
Hepe02g0408 489 Pfam ATP synthase alpha/beta family, beta-barrel domain 24 90 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Hepe02g0408 489 PANTHER V-TYPE PROTON ATPASE SUBUNIT B 16 487 IPR022879 GO:0007035(PANTHER)|GO:0046961(PANTHER)
Hepe02g0408 489 NCBIfam V-type ATPase subunit B 20 488 IPR005723 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Hepe02g0408 489 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 147 378 IPR000194 GO:0005524(InterPro)
Hepe02g0408 489 Pfam C-terminal domain of V and A type ATP synthase 384 483 - -
Hepe02g0408 489 Gene3D - 29 489 - -
Hepe02g0408 489 CDD ATP-synt_V_A-type_beta_N 20 91 - -
Hepe02g0408 489 ProSitePatterns ATP synthase alpha and beta subunits signature. 369 378 IPR020003 GO:0005524(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0408 K02147 - csv:101211838 952.97