Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0413 ATGGATTTTGACGAGTATGATTATTTAGAGCAAACAGTTGAAAATCCCGAGGGACAGAAAGTGAAGGAAACTGCCAATGGCGGCGGTGATGCAGAACTGAAGTCTGGAGATAAACATCGGAGTCGAAGTTCGAAGCATAAGAGTGATGGAAAAGATGATGGGGAACATAGGTCAAAGCGTTCAAAGTCAGAAGATGAGTCACGTGAACATGATCGACATAGAGATAGGACTTCTTCCCGGCACCGGTCTAGGTCCAGAGATAGAGACCGTGATCGACACAGAAGCAGTAAGGAGTATAAGGGAAAAGAGGACAGAGAAAGGATTCAGGAAGAGAGGAGCAGTAAGGACAGAGATGCGGACAAGGACAAGGACAAAGATAAAGAACGTGCTCACGATCGTGATAGACGAGGTAGAGATGGTGAAAGGGATAGGGAAAGAGAACGGTCACGTCGAAGTAGAAGTCATTCAGAAAGACATCGCAGCAATCGAGATGAGAGCATAATAGAGAAAAACCGAGATAATGAATTCAGAGAAAGGGAAAAAGAGAGAGAGTCAAGAGAGCGAGGCAGAGATGGCAGAAGATATAATAAAGAGAAAAAGGAAGAAGCAGCAGAAGCAGAAGTTGATCCTGAAAGGGATCAGAGGACTGTATTTGCCTATCAGATAAGTTTAAAGGCAACTGAAAGAGATGTGTACGAATTCTTCTCCAGGGCCGGTAAGGTGCGAGATGTACGCCTCATAATGGATCGTAATTCAAGACGTTCAAAAGGCGTTGGGTATGTTGAATTTGTAGATTCAATGTCTGTGCCCATGGCTATAGCACTTTCGGGCCAGCTCCTGCTTAGTCAACCTGTGATGGTAAAGCCATCTGAAGCTGAGAAGAACCAGGTTCAATCAACTTCTGCTGCTGGTGGATTAGGTGGAGTAATGGGCCCCTACTCTGGTGGTGCCAGAAGGTTATATGTTGGCAATCTGCACCCCAACATAACAGAAGACAACATTCGTCAGGTTTTTGGAGCTTTTGGCATTGTGGAACTGGTTCAGATGCCCCTTGATGAAACTGGGAATTGCAAGGGTTTTGGTTTTGTTCAGTTCTCCCGTCTTGAAGATGCTAGAAATGCACTGAGTTTGAATGGACAACTTGAGATTGCTGGTCGAATGATAAAGGTGTCCACAGTCACTGATCAGCTTGGACTGCAAGATATTGGAGCAATTACAGGAGACCTTGATGATGAAGATGGCGTTGGCTTGTCCTTAAACGCTAGTTCTCGAGCATCCCTGATGCAGAAGCTGGACCGTACTGGCGCCGCATCTAGCATTGCTGGTTCGTTAGGTACACATGTCGTAAATAATACAGGCGCTAATTTGCCAATGCCACCGATTCTTGGAGCTGGAACTATCCCTTCCTTTGTTACTTCTATGGGTACCGTTCCTGGTTTTCCTGGACTTGGTGCAGGCGTTCAGGTTCCCACTGTTACTGCCAATTTACTTGGTGTTGGTACTCCAAGTGAATGCTTACAATTGAAGAATATGTTTGATCCCACAGCTGAGTCGGAACCAAATTTTGATCTGGATATCAGAGACGATGTTGAAGAGGAATGCTCTAGGTTCGGAAAATTGAAACATATATACATTGACAAGAATAGCGCCGGTTTTGTATACTTGAGATTTGAAAATGCACAGTCTGCAATGGATGCACAACGTGCCCTTAATGGAAGATGGTTTGCTGGGAAAATGATCGGTGCAACTTTCATGGACATCCCGAGCTACGAAGCGAAATTTCCAGACAGCAGATAG 1797 45.02 MDFDEYDYLEQTVENPEGQKVKETANGGGDAELKSGDKHRSRSSKHKSDGKDDGEHRSKRSKSEDESREHDRHRDRTSSRHRSRSRDRDRDRHRSSKEYKGKEDRERIQEERSSKDRDADKDKDKDKERAHDRDRRGRDGERDRERERSRRSRSHSERHRSNRDESIIEKNRDNEFREREKERESRERGRDGRRYNKEKKEEAAEAEVDPERDQRTVFAYQISLKATERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYVEFVDSMSVPMAIALSGQLLLSQPVMVKPSEAEKNQVQSTSAAGGLGGVMGPYSGGARRLYVGNLHPNITEDNIRQVFGAFGIVELVQMPLDETGNCKGFGFVQFSRLEDARNALSLNGQLEIAGRMIKVSTVTDQLGLQDIGAITGDLDDEDGVGLSLNASSRASLMQKLDRTGAASSIAGSLGTHVVNNTGANLPMPPILGAGTIPSFVTSMGTVPGFPGLGAGVQVPTVTANLLGVGTPSECLQLKNMFDPTAESEPNFDLDIRDDVEEECSRFGKLKHIYIDKNSAGFVYLRFENAQSAMDAQRALNGRWFAGKMIGATFMDIPSYEAKFPDSR 598
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3944863 3958008 + Hsped.02g04130.1 Hepe02g0413 561914

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0413 598 Gene3D - 311 396 IPR012677 -
Hepe02g0413 598 Gene3D - 155 302 IPR012677 -
Hepe02g0413 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 318 395 IPR000504 GO:0003723(InterPro)
Hepe02g0413 598 NCBIfam splicing factor, CC1-like family 104 596 IPR006509 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006397(InterPro)
Hepe02g0413 598 SUPERFAMILY RNA-binding domain, RBD 318 584 IPR035979 GO:0003676(InterPro)
Hepe02g0413 598 FunFam CC1-like, splicing factor 313 421 - -
Hepe02g0413 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 507 587 IPR000504 GO:0003723(InterPro)
Hepe02g0413 598 MobiDBLite consensus disorder prediction 32 209 - -
Hepe02g0413 598 Gene3D - 500 598 IPR012677 -
Hepe02g0413 598 Pfam RNA recognition motif 320 388 IPR000504 GO:0003723(InterPro)
Hepe02g0413 598 Pfam RNA recognition motif 528 579 IPR000504 GO:0003723(InterPro)
Hepe02g0413 598 Pfam RNA recognition motif 224 283 IPR000504 GO:0003723(InterPro)
Hepe02g0413 598 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 215 292 IPR000504 GO:0003723(InterPro)
Hepe02g0413 598 CDD RRM3_RBM39_like 503 586 - -
Hepe02g0413 598 MobiDBLite consensus disorder prediction 1 209 - -
Hepe02g0413 598 CDD RRM1_RBM39_like 216 288 - -
Hepe02g0413 598 Pfam linker between RRM2 and RRM3 domains in RBM39 protein 409 522 IPR029123 -
Hepe02g0413 598 PANTHER SPLICING FACTOR (PAD-1), PUTATIVE (AFU_ORTHOLOGUE AFUA_1G15810)-RELATED 2 597 IPR006509 GO:0003723(InterPro)|GO:0005634(InterPro)|GO:0006397(InterPro)|GO:1990446(PANTHER)
Hepe02g0413 598 SUPERFAMILY RNA-binding domain, RBD 211 316 IPR035979 GO:0003676(InterPro)
Hepe02g0413 598 SMART rrm1_1 319 391 IPR000504 GO:0003723(InterPro)
Hepe02g0413 598 SMART rrm1_1 216 288 IPR000504 GO:0003723(InterPro)
Hepe02g0413 598 SMART rrm1_1 505 583 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0413 K13091 - - csv:101209872 848.195
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0413 Hepe-Chr2:3944863 Hepe04g1141 Hepe-Chr4:66533380 2.44e-153 dispersed
Hepe02g0413 Hepe-Chr2:3944863 Hepe01g1741 Hepe-Chr1:82571237 2.69e-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g183 . . . Bda08g00985 . . Bma05g00377 . . . . . . . Sed05g2245 . . Bhi05g01691 Tan02g0661 Cmetu01g1207 . Hepe02g0413 . . Cla02g00412 Cam02g0421 Cec02g0420 Cco02g0438 Clacu02g0423 Cmu02g0418 Cre02g0752 Cone12ag1242 Cone8ag1298 . . . Csa07g00115 . Cme01g01244 . . . . . . . . . . . . . . Car19g00582 . . . . . . . . . . . . . . . . . . Chy01g00667 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002135 1 5 1 2 2 2 3 2 2 2 2 2 2 2 2 3 2 4 3 2 2 2 2 1 2 1 2 3 2 2 65