Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0417 ATGTGTGTGCCTACTTTGATATACAAAGCATGTAGATGTGATATTAATCAGAGTATTGTCATCATGCAAAACCTTATGGAGAGGCTAAGACCCCTTGTGGGTAGTAAAAGCTGGGATTACTGTGTTCTCTGGAAACTGAGCCAAGACCAGAGATGTATTGAATGGATGGATTGCTGTTGTGCTGGGACTGAGAATAATCAAAATGGTGGAGAAGAACTTGTATTTCCTGTTTCTCAAGTTATTCCATGTAGGGATACCATATGTCCACACCCAAGAGCCAGTTCTTGTGATCTTCTTGCTCAGCTTCCATGTTCGGTGCCTCTAAATTCGGGGGTTTATATACAGACATTGTTATCAAATGAACCTAAATGGCTACTCTTCTCCAATGGCACGGATTCAACCGCACTGGAAGAAACAGTGGGGACCAGGGTATTAGTTCCATTTCCATTTGGACTAGTGGAGCTGTTCGTTGCTAAACATGCATCTGAAGATCAGCATGTCATAGATTTTGTTACAACTCAATGCAGCATTTCGATAGAGCAAGAAGCCATTATTAATTCAAGCAACATGGATACAAGTTTCTCTGTTGATGTAAATGCAACAAACGAAATCCAACCAAAGTCATTTGAAGCAGATCAGAATGTTGTTCTAAAAGATCCTGAAAATCAATTTGAGGCAACAGGCTTAGCCACGCCAACATTAGAAAATGCCAATGTGGGTTATGACATCTCATTAGACAGAATCCGCCTCTGCAGTTCTCCTATGAACTTCTTGCAACAGTTCAATTACAGCTCAGAGAACAGAAACAAGAACGAAATGTTCCAAGAATGTTCACAGGATTCATTCCTTGCTGATAAGCAGGGAAACCCTTACAAGTTTTCAGCCGAAAATGAGTTCCAAGAGGTGGATATGATGCAGGGGTCCTTAATGAACAACACATCAAACATTCATATGCAGTTCAAGGAGAACACTGAATGTAAAGAGCAGCAAGGGGAAGAAAAGGACTTAGTCAAACATGAAAATGGAAGGTCTGATTCAATCTCTGATTGCAGTGATCAGATTGATGACGAAGATGATGCAATAGCAAAGTACCGCCGGAGGACTGGGCAGGGTCCTCAATCAAAGAACCTTGTTGCTGAGAGGAAGAGAAGAAAGAAACTTAATGAGCGGCTGTATAACCTACGAGCATTGGTTCCCAAAATTTCTAAGATGGACAAAGCCTCAATCCTTGGTGATGCAATTGATTTTGTGAAGGAGTTGCAAAAGCAAGTCAAGGACCTCCAAGATGAATTGGAAGAACAGTCAGATGATGAAAATGGTAAGACTATTACAGGAAACAATGGAAACCAAAATAGTGTACAGCTACCTGAGTTTCTGAGCCATAATGAAAAAGCTCAAAACAGTTACCATATGGGAGTACTAGGGAGTGGAAGCCATTTGAAGCAAAATCATCAGGAGACTGAAGGTACTAACAATGACAAGACACAACAGATGGAGCCGCAAGTGGAAGTGGCTCAGATTGATGGAAACGAATTCTTTGTAAAGGTTTTCTGTGAGAACAAGCGAGGTGGGTTTATGAGGTTAATGGAGGCCTTAAATGCTCTTGGCTTGGAAGTAACAAATGCAAATGTGACCAGCTATAGAGGCCTCGTATCTAATGTTTTCAAAGTTGGGAAAAAGGACAGTGAAATAGTTCAAGCAGATGATGTAAGAGACTCCTTGCTGGAGATAACAAAGTACCCATGTAGAGGATGGTCTGAAATGATTAAGGTACCAGATTGCATTGGAAGCCGCATGGACTACCAGCACCAGCACCAGATCCAGCATCCATTTCAAGACAAAGCTATCAATTCACGCCTCCACCTCCTAGATGATTAA 1878 41.43 MCVPTLIYKACRCDINQSIVIMQNLMERLRPLVGSKSWDYCVLWKLSQDQRCIEWMDCCCAGTENNQNGGEELVFPVSQVIPCRDTICPHPRASSCDLLAQLPCSVPLNSGVYIQTLLSNEPKWLLFSNGTDSTALEETVGTRVLVPFPFGLVELFVAKHASEDQHVIDFVTTQCSISIEQEAIINSSNMDTSFSVDVNATNEIQPKSFEADQNVVLKDPENQFEATGLATPTLENANVGYDISLDRIRLCSSPMNFLQQFNYSSENRNKNEMFQECSQDSFLADKQGNPYKFSAENEFQEVDMMQGSLMNNTSNIHMQFKENTECKEQQGEEKDLVKHENGRSDSISDCSDQIDDEDDAIAKYRRRTGQGPQSKNLVAERKRRKKLNERLYNLRALVPKISKMDKASILGDAIDFVKELQKQVKDLQDELEEQSDDENGKTITGNNGNQNSVQLPEFLSHNEKAQNSYHMGVLGSGSHLKQNHQETEGTNNDKTQQMEPQVEVAQIDGNEFFVKVFCENKRGGFMRLMEALNALGLEVTNANVTSYRGLVSNVFKVGKKDSEIVQADDVRDSLLEITKYPCRGWSEMIKVPDCIGSRMDYQHQHQIQHPFQDKAINSRLHLLDD 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 3976085 3979850 - Hsped.02g04170.1 Hepe02g0417 561918

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0417 625 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 25 172 IPR025610 -
Hepe02g0417 625 Gene3D - 365 437 IPR036638 GO:0046983(InterPro)
Hepe02g0417 625 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 315 578 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Hepe02g0417 625 Pfam Helix-loop-helix DNA-binding domain 378 421 IPR011598 GO:0046983(InterPro)
Hepe02g0417 625 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 371 420 IPR011598 GO:0046983(InterPro)
Hepe02g0417 625 SMART finulus 377 426 IPR011598 GO:0046983(InterPro)
Hepe02g0417 625 MobiDBLite consensus disorder prediction 475 496 - -
Hepe02g0417 625 MobiDBLite consensus disorder prediction 325 355 - -
Hepe02g0417 625 MobiDBLite consensus disorder prediction 428 452 - -
Hepe02g0417 625 MobiDBLite consensus disorder prediction 325 350 - -
Hepe02g0417 625 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 375 434 IPR036638 GO:0046983(InterPro)
Hepe02g0417 625 Coils Coil 410 437 - -
Hepe02g0417 625 CDD bHLH_AtAMS_like 374 442 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0417 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0417 Hepe-Chr2:3976085 Hepe10g1639 Hepe-Chr10:53096347 3.54e-63 dispersed
Hepe10g0469 Hepe-Chr10:5422246 Hepe02g0417 Hepe-Chr2:3976085 1.30e-07 dispersed
Hepe02g0417 Hepe-Chr2:3976085 Hepe04g1377 Hepe-Chr4:69436800 2.04e-17 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g174 . . . . . . . . Cmo19g00756 Cmo11g01748 . . . . Sed05g2587 Cpe04g00600 Cpe15g00600 Bhi05g01697 Tan02g0669 Cmetu01g2019 . Hepe02g0417 . . Cla02g00417 Cam02g0427 Cec02g0425 Cco02g0443 Clacu02g0428 Cmu02g0423 Cre02g0757 . . . . . . . . Blo04g00576 . . Bda14g00621 Bpe15g00806 . Bma03g00615 . . . . Cma11g01372 Cma19g00746 . Car19g00575 . . . . . . . . . . . . . . . . Lsi11g01209 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006375 1 1 2 2 1 1 2 1 1 1 1 1 2 1 2 2 1 1 2 1 1 1 1 1 1 1 1 1 1 2 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54959 PF14215 bHLH-MYC_N 6.80E-18 CL0161 Hepe TF