Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0438 ATGGAAAATGGGGTTGTGATTGTGGATGGCTTGCACGATGGACAGAAGAAGTTTGCCGAAGATGGTGTTTCGCGGGTTAGAGTTAGGGTAGATGAAAGAGTTGTACTTGGTTCTTCTCTCGAATCTAAGGATGCGGAAGGGGAAGATGTTTTTCAGGAAGCATTAGATGGGAAAGATTATTTGGTAGAGCAGAGTCCGAAATATGGTACGGCGCGGGCTTATGCTGCAGAAGAAGCAATCGATTATTTTGAATCTGTAGTAACTTCTGACCGTCCTAATGGGACTCACGATGAAGAGAAGTTTGAAGAGGCAATTGAGGCTTCTAGTGGGGTGAATGAAAAAACGGTGGTGGAGGAGCAAGATGTGAATTCTGCAAAGGAGAAGGAAGATTTGGTTGAGAAATTGGTTGACAGTGCAGTTGTGGCTTCTAAAATTGATGAGAGAGGAATTGAAGAGGAAGCAGTGACTTCCAAGTTGAATGAGAGGGAGGATAATGAAATGGAGAAGGCAGACTTGGGTGAGAAATTGGTTGACAGTGCAGTTGTGGCTTCTAAAATCGACGACGGAGGAATTGAAGAGGAAGCAGTGACTTCTGAGTTGAATGAGAGGAAGGATAATGAAAAGGAGAAGGATGACTTTGGTGAGAAATTGGTTGACAGAGCAGTTGTGGCTTCTAAAATTGACGACAGTGGAATTGAAGAGGAAGCAGTGACTTCTAAGTTGAATGAGAGGAAGGATAATGAAAAGGAGAAGGATGACTTTGGCGAGAAATTGCTTGACAGTGCAGTTGTGGCTTCTAAAATCGACGACAGAGGAATCATCTCCTCTGAAATCGATGAGTTGGATTTCAGTGGAGATAATTCAGGAAAGGAAACATCAGAGAACGGTGCTAGCCCAGAGGTTGAAGTGTTGAAGGGTGGGGGTCAGGATGATTTGAATCGTGGTTCGACGAGTAGGGAATCTGAAGATAGTGACAATTTGAATGTGACTTTGCCTTCAGATGACAAATTGGTGAATAAGAGTGCTGATACGGTAGGGGGGACTAACCTGGATTCTACTAGTGAGATTCTTACTGAAAATGGTGATGATGTGGAATTGAAGGAGAAGAGGTTAGGTACAGAGTCTACAGACCATGATGAGAAGACTGAGGAGCCATTAAGTGCACCCACTGTCCTTAATTTGGACAATCAAGATAATACGAACGCTGAGCTAAGGGATGATTCTCTTCACGTGGATCGAGAACTGCCAGACAATGGAAGTGAAGAAATAAAAAAGGCTACAACTGGTATTGATCCTAAGAGTGAGGATATTAAATATGAAGAAAGGTCTTCAACCTGCACGACTACTGCAAATCAGGATCCCAGGATTGAGGAAGTGAAAGAAGCTTCTACTGGGAAAGACTCAGATGAGCAGTCTAGAGAATCTCGTGAATTGAATGGTACTACTTCTGCTGACCAACATAAACCTGTGGGTGAAAATGAAATTTCTCTGGAGACAGTTAAGGATATCTCAGCTACTGAAAAGATAGCAGATGAGAAAATTGAGAAGATCCAGGGTAGTGAAAGTGATGTGACTGTGAAGGAAGACAATATGTCCAGACATCAGCATCCTGTTGATAGTTCCAATAATGGCCCCGACACTGGAGGGCTTGAAAAGACAGAGAGCAAAGATAAGGTTGGGCAGGACAAAACTCAAGTGAACAGGGATCCAGAAATTCAACCTGCATCAATCATTGCTTCATCATCTGGAAAATCTACAAATCCCACTCCTCCTGCCCGTCCAGCTGGTCTTGGGCGTGCTGCTCCATTATTGGAACCTGCCCCTCGGGTGGTGCAGCCGTCTCGAGTAAATGGTACTGTATCCCATGTTCAAATGCAACAAATTGATGATCCTGTTAATGGGGATGTCGAGGAAAATGATGATACTCGCGAGCAACTCCAGATGATAAGAGTGAAATTTTTGCGTCTTGCACATAGGCTTGGGCAAACCCCACACAATGTTGTTGTGGCACAAGTTCTATACCGTCTTGGATTAGCTGAGCAACTTCGAGGAAGAAATGGAGGTCGGGTTGGCGCCTTTAGCTTTGACCGTGCCAGTGCCATGGCAGAGCAGCTGGAGGCAGCTGGGCAAGAACCACTTGATTTCTCTTGTACGATCATGGTTCTTGGAAAGTCAGGTGTGGGTAAAAGCGCTACCATCAACTCCATATTTGATGAAGTTAAGTTCAGTACCGATGCTTTTCAAATGGGCACGAAAAAGGTTCAAGATGTCGTGGGAACTGTGCAGGGGATCAAAGTAAGGGTCATTGACACTCCTGGCCTTCTTTCTTCTTGGTCAGACCAGCGCCAAAATGAGAAGATCCTTCTCTCTGTTAAGCGCTTTATAAAGAAGACGCCTCCAGATATTGTTTTGTACCTTGATAGGCTGGATATGCAAACTCGGGATTTCAGTGATATGCCTCTCTTGCGTACAATTACTGAAATATTTGGGCCATCAATATGGTTCAATGCAATTGTGGTTCTTACTCATGCAGCATCTGCTCCACCTGATGGTCCAAATGGTACTGCTTCTAGTTATGATATGTTTGTCACTCAGCGATCTCATGTTGTACAGCAAGCTATACGCCAGGCTGCAGGGGATATGCGCCTTATGAATCCTGTCTCATTAGTGGAGAATCACTCTGCTTGCAGAACAAACAGAGCTGGGCAAAGGGTATTGCCAAATGGTCAGGTTTGGAAACCTCATTTGTTATTGCTCTCATTTGCGTCAAAGATTTTGGCCGAAGCTAACACTCTTTTGAAGTTGCAAGACAGTCCTCCTGGAAGGCCATTTGCTCATCGGTCAAAATCACCTCCTTTACCCTTCCTTCTCTCCTCCCTTCTTCAATCCAGACCTCAAGTGAAACTGCCAGAGGAACAGTTTGCTGATGATGATGGTCTTGAAGATGACCTTGATGAATCGTCAGATTCTGAAAATGAATCTGAATATGACGAATTGCCACCTTTTAAACGCTTGACAAAAGCTCAGGTGGCAAAGCTCTCCAAAGAACAGAAGAAGGCCTACTTTGACGAGTTGGAATACAGGGAAAAAGTTTTTATGAAGAAGCAACTAAAAGAAGAGAAAAGGAGAAGGAAGATGATGAAGAAAATGGCTGCTGAGGTAAAAGATCAACTCGGTGACTATAGTGAAAATGTGGAAGAAGATAGTGGTGCTGCTGCATCCGTTCCAGTTCCCATGCCCGATTTGTCCTTACCTGCTTCCTTTGATTCTGATAATCCCACTCACCGGTATCGTTATCTTGATTCCTCTAACCAGTGGCTAATAAGGCCTGTACTCGAAACACATGGATGGGATCATGATGTTGGTTATGAAGGTATAAATGCAGAGAAGTTGTTTGTCGTCAAAGACACAATACCCATCTCTTTTAGTGGTCAAGTTACCAAGGATAAGAAGGATGCAAATGTTCAAATGGAGATGACCAGTTCGATAAAGCATGGGGAAACTAAATCATCTTCGATTGGTTTTGATATGCAAACTGTTGGGAAGGATTTGGCCTATACACTACGTGGTGAGACGGCATTTATTAATTTTAGGAAGAACAAGGCACTTGCTGGTCTGTCAGTTTCTCTATTAGGCGACGCCTTATCTGCAGGATTCAAAGTTGAAGACAAATTGATTGCAAATAAGCGATTTCACTTAGTTGTGACTGGGGGTGCAATGACCGGTAGGGGAGATGTAGCTTATGGTGGCAGCTTGGAGGCTCAATTGAAAGATAAAGATTATCCTTTGGGTCGTTCACTTTCAACTCTTGGGCTTTCGGTCATGGATTGGCATGGAGATCTTGCTATTGGTTGCAATGTACAATCTCAAGTTCCTGTTGGACGATCAACAAACCTGATTGCTCGTTTGAATTTGAATAACAGGGGGGCAGGGCAAGTCAGCTTTCGGTTAAACAGCTCAGAACAGCTTCAGATAGCCATTGTTGGTCTCCTTCCTCTATTCAGAAAGCTTTTGGGTTGTTACCAATATTGGCAGGATGGACAATGA 4047 43.79 MENGVVIVDGLHDGQKKFAEDGVSRVRVRVDERVVLGSSLESKDAEGEDVFQEALDGKDYLVEQSPKYGTARAYAAEEAIDYFESVVTSDRPNGTHDEEKFEEAIEASSGVNEKTVVEEQDVNSAKEKEDLVEKLVDSAVVASKIDERGIEEEAVTSKLNEREDNEMEKADLGEKLVDSAVVASKIDDGGIEEEAVTSELNERKDNEKEKDDFGEKLVDRAVVASKIDDSGIEEEAVTSKLNERKDNEKEKDDFGEKLLDSAVVASKIDDRGIISSEIDELDFSGDNSGKETSENGASPEVEVLKGGGQDDLNRGSTSRESEDSDNLNVTLPSDDKLVNKSADTVGGTNLDSTSEILTENGDDVELKEKRLGTESTDHDEKTEEPLSAPTVLNLDNQDNTNAELRDDSLHVDRELPDNGSEEIKKATTGIDPKSEDIKYEERSSTCTTTANQDPRIEEVKEASTGKDSDEQSRESRELNGTTSADQHKPVGENEISLETVKDISATEKIADEKIEKIQGSESDVTVKEDNMSRHQHPVDSSNNGPDTGGLEKTESKDKVGQDKTQVNRDPEIQPASIIASSSGKSTNPTPPARPAGLGRAAPLLEPAPRVVQPSRVNGTVSHVQMQQIDDPVNGDVEENDDTREQLQMIRVKFLRLAHRLGQTPHNVVVAQVLYRLGLAEQLRGRNGGRVGAFSFDRASAMAEQLEAAGQEPLDFSCTIMVLGKSGVGKSATINSIFDEVKFSTDAFQMGTKKVQDVVGTVQGIKVRVIDTPGLLSSWSDQRQNEKILLSVKRFIKKTPPDIVLYLDRLDMQTRDFSDMPLLRTITEIFGPSIWFNAIVVLTHAASAPPDGPNGTASSYDMFVTQRSHVVQQAIRQAAGDMRLMNPVSLVENHSACRTNRAGQRVLPNGQVWKPHLLLLSFASKILAEANTLLKLQDSPPGRPFAHRSKSPPLPFLLSSLLQSRPQVKLPEEQFADDDGLEDDLDESSDSENESEYDELPPFKRLTKAQVAKLSKEQKKAYFDELEYREKVFMKKQLKEEKRRRKMMKKMAAEVKDQLGDYSENVEEDSGAAASVPVPMPDLSLPASFDSDNPTHRYRYLDSSNQWLIRPVLETHGWDHDVGYEGINAEKLFVVKDTIPISFSGQVTKDKKDANVQMEMTSSIKHGETKSSSIGFDMQTVGKDLAYTLRGETAFINFRKNKALAGLSVSLLGDALSAGFKVEDKLIANKRFHLVVTGGAMTGRGDVAYGGSLEAQLKDKDYPLGRSLSTLGLSVMDWHGDLAIGCNVQSQVPVGRSTNLIARLNLNNRGAGQVSFRLNSSEQLQIAIVGLLPLFRKLLGCYQYWQDGQ 1348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4214610 4220251 + Hsped.02g04380.1 Hepe02g0438 561939

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0438 1348 MobiDBLite consensus disorder prediction 193 215 - -
Hepe02g0438 1348 MobiDBLite consensus disorder prediction 454 476 - -
Hepe02g0438 1348 MobiDBLite consensus disorder prediction 971 1001 - -
Hepe02g0438 1348 NCBIfam chloroplast protein import component Toc86/159, G and M domains 593 1341 IPR005690 GO:0003924(InterPro)|GO:0005525(InterPro)|GO:0009707(InterPro)|GO:0045036(InterPro)
Hepe02g0438 1348 Coils Coil 1037 1057 - -
Hepe02g0438 1348 Gene3D - 686 934 IPR027417 -
Hepe02g0438 1348 MobiDBLite consensus disorder prediction 400 442 - -
Hepe02g0438 1348 ProSiteProfiles AIG1-type G domain profile. 714 943 IPR006703 GO:0005525(InterPro)
Hepe02g0438 1348 Pfam Translocase of chloroplast 159/132, membrane anchor domain 1075 1338 IPR024283 -
Hepe02g0438 1348 FunFam Translocase of chloroplast 120, chloroplastic 689 936 - -
Hepe02g0438 1348 MobiDBLite consensus disorder prediction 566 589 - -
Hepe02g0438 1348 CDD Toc34_like 689 934 - -
Hepe02g0438 1348 MobiDBLite consensus disorder prediction 975 995 - -
Hepe02g0438 1348 MobiDBLite consensus disorder prediction 228 256 - -
Hepe02g0438 1348 MobiDBLite consensus disorder prediction 322 359 - -
Hepe02g0438 1348 Pfam AIG1 family 717 875 IPR006703 GO:0005525(InterPro)
Hepe02g0438 1348 MobiDBLite consensus disorder prediction 504 535 - -
Hepe02g0438 1348 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 710 851 IPR027417 -
Hepe02g0438 1348 MobiDBLite consensus disorder prediction 550 565 - -
Hepe02g0438 1348 MobiDBLite consensus disorder prediction 360 385 - -
Hepe02g0438 1348 PANTHER GTPASE, IMAP FAMILY MEMBER-RELATED 715 1281 IPR045058 GO:0009707(PANTHER)|GO:0045036(PANTHER)
Hepe02g0438 1348 MobiDBLite consensus disorder prediction 275 599 - -
Hepe02g0438 1348 MobiDBLite consensus disorder prediction 104 128 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0438 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0438 Hepe-Chr2:4214610 Hepe02g1092 Hepe-Chr2:13558655 8.36e-216 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g129 . . . . . Bpe12g00112 . . Cmo19g00737 . . . . . Sed08g0469 . Cpe15g00583 Bhi05g01734 Tan02g0702 Cmetu06g1183 . Hepe02g0438 . . Cla02g00439 Cam02g0448 Cec02g0446 Cco02g0466 Clacu02g0450 Cmu02g0444 Cre02g0778 Cone2ag0203 Cone16ag0840 . . . Csa07g00087 . Cme01g01277 Blo04g00558 Blo13g00521 . Bda14g00607 Bpe15g00822 . Bma03g00599 Bma08g00616 . . . Cma11g01385 Cma19g00728 . Car19g00558 . . . . . . . . . . . . . . . . Lsi11g01187 . Chy01g00691 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005811 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39