Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0478 ATGAAGATCCGTTGCGATGTTTGTGATCAAGCGGAGGCCTCTGTTTTTTGCTCTGCTGATGAAGCTGCTCTTTGCCATGGCTGCGATCTTCATGTTCATCGCGCTAATAAGCTCGCCGGAAAACACTCCAGATTCTCCCTACTTCATCCGATCAAATCGGATTCTCCTCTTTGCGATATCTGTCAGGAACGGCGCGCGCTTGTATTTTGTCAACAAGATAGGGCAATTCTTTGCAGAGAATGCGATATTTCGATCCACGAAGCGAACGAACATACGCAGAAGCACAGTCGATTTCTTCTCACAGGTGTGAAGCTTTCTTCGGCTTGTTTTTCTTACCAAACATCTTCGTCTTCCAATGGCTGTGATGCCGCCATGGATGTTAAAACTGGAAGCTCACACATCGCTTGCAGCAAGAGACCTAAAATGCCTGCGAATAACGAAATCTCGAGCTCTCATAATTCCGCTGAAAAACCTGCTCCGTCGTCGACGAGTAATTACAAAATCGAAGACGGCCAAGCAAGCGACGGCGGTTCGTTCTCGACGAGCAGCATATCGGAATATTTGGAGACACTGCCGGGATGGTGCGTGGAGGAGTTTCTCGATCCTTCCGCCGCCGCCGCCGCCGCCAATAGTTTCTGTAAGTTTAATGGCGGAATTCTGCAATTTGTGAATCAAAATCTGGAGAGGCAACAAGAATCATCGAAAGGGTCCATCAGATTTCGCAACACCTTGGAAATTTTAGGTAAATTTTCTCAAACTAGATCTTGGAATGGGGTTGGAATAATAATCTCCATGAAAATTACTCGTAGAGGTGAAAAAATGGCGTTGGTAGATCAGATTCAGATCATGATCATGATCATGAACACCAGCTTTGGCTACAAAACAATTCTGGTAAAAATAG 901 45.62 MKIRCDVCDQAEASVFCSADEAALCHGCDLHVHRANKLAGKHSRFSLLHPIKSDSPLCDICQERRALVFCQQDRAILCRECDISIHEANEHTQKHSRFLLTGVKLSSACFSYQTSSSSNGCDAAMDVKTGSSHIACSKRPKMPANNEISSSHNSAEKPAPSSTSNYKIEDGQASDGGSFSTSSISEYLETLPGWCVEEFLDPSAAAAAANSFCKFNGGILQFVNQNLERQQESSKGSIRFRNTLEILGKFSQTRSWNGVGIIISMKITRRGEKMALVDQIQIMIMIMNTSFGYKTILVKI 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4666861 4668167 - Hsped.02g04780.1 Hepe02g0478 561979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0478 300 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Hepe02g0478 300 FunFam B-box zinc finger protein 21 1 98 - -
Hepe02g0478 300 CDD Bbox1_BBX-like 5 47 IPR049808 -
Hepe02g0478 300 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Hepe02g0478 300 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Hepe02g0478 300 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Hepe02g0478 300 Pfam B-box zinc finger 3 46 IPR000315 GO:0008270(InterPro)
Hepe02g0478 300 Pfam B-box zinc finger 54 92 IPR000315 GO:0008270(InterPro)
Hepe02g0478 300 MobiDBLite consensus disorder prediction 143 178 - -
Hepe02g0478 300 CDD Bbox1_BBX-like 57 100 IPR049808 -
Hepe02g0478 300 MobiDBLite consensus disorder prediction 134 178 - -
Hepe02g0478 300 Gene3D Classic Zinc Finger 1 98 - -
Hepe02g0478 300 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 227 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe01g1643 Hepe-Chr1:81637092 Hepe02g0478 Hepe-Chr2:4666861 6.17e-59 dispersed
Hepe02g0478 Hepe-Chr2:4666861 Hepe07g0957 Hepe-Chr7:12812874 7.33e-36 dispersed
Hepe04g1574 Hepe-Chr4:71240552 Hepe02g0478 Hepe-Chr2:4666861 5.03e-21 transposed
Hepe10g0125 Hepe-Chr10:1269043 Hepe02g0478 Hepe-Chr2:4666861 6.09e-55 wgd
Hepe02g0478 Hepe-Chr2:4666861 Hepe08g0983 Hepe-Chr8:9285986 4.48e-66 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54969 PF00643 zf-B_box 5.00E-07 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0478 - - - 0.0