Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0484 ATGAATCGGAGTTTCTTCTTGTTCGCCGTCGTCTTCGCCGCCGCCGCCACCCTCTGCTCATCGGAATCCTCTGCCTCGCCGCATTCCGTCGAACCCAACGGCGATCCGCTGATTCGTCAGGTCGTCGACGACGACGGCGTAGCTTCCAATTGTCTCCAGCTCGGAGCGGAGCACCATTTTTCGGTCTTCAAGCGAAAGTTCAAGAAATCGTATGCCACCGAGGAAGAGCACGATCGTAGATTCAAGATCTTCCAGGCTAATATGCGACTGGCGCTGCGCCATCAGTCCTTTGATCCGTCCGCTGCTCATGGCATTACTCAGTTCTCCGATTTGACCCCTTCCGAGTTCCGGAAGGCCTTTCTAGGGCTCCGGGGTCATCGCCTTAAACTTCCTGTGGATGCCAATGCGGCTCCGATTCTTCCTACGGAGAATCTTCCGACTGATTTTGATTGGAGGGAACGTGGTGCTGTAACTGCTGTGAAAGATCAGGGATCTTGCGGATCCTGCTGGAGTTTCAGTACAGCCGGTGCCCTTGAAGGTGCTAACTTCCTTGCTACAGGGGAACTTGTTAGCTTAAGCGAACAGCAGATTGTAGATTGTGATCACGAGTGTGATCCAGAGGAAGCTGATTCCTGTGACTCTGGTTGCAATGGTGGCCTGATGAATAGTGCATTTGAGTACACTCTAAAAACCGGAGGTCTGATGAGGGAGGAAGATTATCCCTATACTGGAACCGATAGCGGAACCTGCAACTTTGACAAGTCCAAGATTGCTGCATCAGTTGCCAATTTCAGCGTTGTTTCACTTGATGAGGATCAAATATCTGCAAATCTGGTCAGAAATGGCCCACTTGCAATTGCTATCAATGCGGTGTACATGCAAACATACATAGGTGGAGTATCTTGTCCATTCATATGTTCAAAGCGGTTGGATCATGGAGTTTTGCTGGTGGGTTATGGCTCAGCTGGCTATGCTCCCATTAGAATGAGAGACAAGGACTATTGGATCATCAAAAACTCTTGGGGACAAGACTGGGGAGAAAATGGCTACTACAGGATTTGCAAAGGTAGAAATATCTGTGGAGTTGATTCCTTGGTCTCAACTGTTGCAGCAGTTCATACCCCTTTGGCCGGAGCAGGTCAGTAG 1146 49.83 MNRSFFLFAVVFAAAATLCSSESSASPHSVEPNGDPLIRQVVDDDGVASNCLQLGAEHHFSVFKRKFKKSYATEEEHDRRFKIFQANMRLALRHQSFDPSAAHGITQFSDLTPSEFRKAFLGLRGHRLKLPVDANAAPILPTENLPTDFDWRERGAVTAVKDQGSCGSCWSFSTAGALEGANFLATGELVSLSEQQIVDCDHECDPEEADSCDSGCNGGLMNSAFEYTLKTGGLMREEDYPYTGTDSGTCNFDKSKIAASVANFSVVSLDEDQISANLVRNGPLAIAINAVYMQTYIGGVSCPFICSKRLDHGVLLVGYGSAGYAPIRMRDKDYWIIKNSWGQDWGENGYYRICKGRNICGVDSLVSTVAAVHTPLAGAGQ 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4735053 4737698 - Hsped.02g04840.1 Hepe02g0484 561985

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0484 381 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 310 320 IPR025660 -
Hepe02g0484 381 PRINTS Papain cysteine protease (C1) family signature 334 340 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Hepe02g0484 381 PRINTS Papain cysteine protease (C1) family signature 312 322 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Hepe02g0484 381 PRINTS Papain cysteine protease (C1) family signature 163 178 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Hepe02g0484 381 CDD Peptidase_C1A 146 369 IPR039417 -
Hepe02g0484 381 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 66 362 IPR013128 GO:0004197(PANTHER)|GO:0005615(PANTHER)|GO:0005764(PANTHER)|GO:0008234(InterPro)|GO:0051603(PANTHER)
Hepe02g0484 381 FunFam Cysteine protease RD19A 36 370 - -
Hepe02g0484 381 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 334 353 IPR025661 -
Hepe02g0484 381 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 163 174 IPR000169 -
Hepe02g0484 381 Pfam Cathepsin propeptide inhibitor domain (I29) 60 116 IPR013201 -
Hepe02g0484 381 SUPERFAMILY Cysteine proteinases 57 369 IPR038765 -
Hepe02g0484 381 Pfam Papain family cysteine protease 145 368 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
Hepe02g0484 381 SMART Inhibitor_I29_2 60 116 IPR013201 -
Hepe02g0484 381 Gene3D Cysteine proteinases 39 370 - -
Hepe02g0484 381 SMART pept_c1 145 370 IPR000668 GO:0006508(InterPro)|GO:0008234(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0484 K01373 - - csv:101217613 642.114
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0484 Hepe-Chr2:4735053 Hepe02g0601 Hepe-Chr2:6248705 4.05e-66 dispersed
Hepe01g1049 Hepe-Chr1:75186280 Hepe02g0484 Hepe-Chr2:4735053 1.73e-128 transposed
Hepe05g0980 Hepe-Chr5:44466438 Hepe02g0484 Hepe-Chr2:4735053 9.27e-23 transposed
Hepe10g0121 Hepe-Chr10:1201571 Hepe02g0484 Hepe-Chr2:4735053 2.86e-174 wgd
Hepe02g0484 Hepe-Chr2:4735053 Hepe08g0985 Hepe-Chr8:9320189 1.82e-212 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1019 . . . . . . . . . Cmo12g00389 . . . Car12g00414 Sed05g2303 . Cpe07g00393 Bhi04g00211 Tan02g0772 Cmetu01g1870 . Hepe02g0484 . . Cla08g01454 Cam08g1939 Cec08g1513 Cco08g1652 Clacu08g1629 . Cre08g1415 . . . . . . . Cme03g01917 . Blo18g00796 . . . . . . . . . Cma12g00438 . . . . . . . . . . . . . . . . . . . Lsi08g01359 Csa02g02095 Chy03g01420 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000642 3 3 5 4 4 3 3 3 3 3 2 3 6 3 3 4 3 5 5 3 3 3 3 3 3 3 2 4 3 4 102