Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0492 ATGAACAGAGCATTGCCGGAGATGTTGCACTGTTTGAACACTGCCGGGAACTGTTCTGACACTCTCACAGTTCTCGAGAGGCAGAGGGCTCGTTTGAAATGGCAGCAAGATCAGCTTTTGAATCAACAGCAACACCAGCAGCCATTGAATCAGAGCTGTTTCAATTACGGCGGCGGATTTCCGCCGCCGGTGACTGTTCCGGCGGATCACCTCACGGGGTTTCCGGGGTTCATGAGTGGTGGCAGCGGCGGTGGTGGTGGATTGTCACTTGTTGAGATGATAATGGGGGCAGTGAAGCCTGACCCTGAGTCGGAAGATGGGTGGTCTGAAATGGGCAAGTTCGATCCTTCCCTGTTGTTGAATGCCACTGGTTTTGAGATGAATTCATCTCTCTCTAGAACCTCCAGCTGCCCGCAGGCGGCGGCGGAGAAGATGGGGTCGGCGGCCGGAAGAGAGAGCTTCAAGAAAAGGAAAGCTGAGAAAGTTCACAACACCAACAATGATAAGGTGATTGTGGAGGAAGATGATGATAAAAACAACAACAAAGAGAAGAGGATCAAAGGAAGTGCAGAAGAAGAAGAATTATCCAAAACAACAGATCAAAACAGCACAAAAAACAACTCAACCACATCAAACAACAACAGAGAAACAACTTCAGCTGATACCTCAAAAGAAAACTCCAAAGCTTCAGAAGTTCAAAAGCCTGATTACATTCATGTCAGAGCTCGCCGTGGCCAAGCCACTGATAGCCATAGCTTAGCAGAAAGAGCTAGAAGGGAAAAAATCAGTGAGAGAATGAAGTACTTGCAAGATTTAGTACCAGGATGCAACAAAATCACTGGAAAAGCTGGAATGCTGGATGAGATCATAAACTATGTTCAATCTCTTCAAAGACAAGTTGAGTTCTTGTCCATGAAGTTAGCTGCAGTCAATCCAAGGTTGGATTTCAATGTCGATGATCTCTTCACCAAAGAGGTATTTCCCTCTCCTTGCACCACCGCGAACTTCGCGGCGATCGGCGGAATGTCATCGGAGATGACAGATCCTCCATCCTACTTACAATTCAATCCAAACAATCAACAAATGGTGTCGTGTTGTGGATTAGAAATGGGAATGAATACCTCCGATGTCGCTCTTCGAAGAACAATCAGCGCCCCTGTTTCTTTCCCGGAAAATTTCCTCGATTCATCCTGCCTCACCCAATTTCAACCCTCTTCAGGGTGGGACGTGGATTTGCAGAATCTGTACAATGTGGGTTTCGATCAAGGAAGATCATCAAACGCGTTTTCATCTCAGCCATATACAGGTTCAATTGAAGGAAGCAATATAAAGATGGAAATGTGA 1344 46.28 MNRALPEMLHCLNTAGNCSDTLTVLERQRARLKWQQDQLLNQQQHQQPLNQSCFNYGGGFPPPVTVPADHLTGFPGFMSGGSGGGGGLSLVEMIMGAVKPDPESEDGWSEMGKFDPSLLLNATGFEMNSSLSRTSSCPQAAAEKMGSAAGRESFKKRKAEKVHNTNNDKVIVEEDDDKNNNKEKRIKGSAEEEELSKTTDQNSTKNNSTTSNNNRETTSADTSKENSKASEVQKPDYIHVRARRGQATDSHSLAERARREKISERMKYLQDLVPGCNKITGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNVDDLFTKEVFPSPCTTANFAAIGGMSSEMTDPPSYLQFNPNNQQMVSCCGLEMGMNTSDVALRRTISAPVSFPENFLDSSCLTQFQPSSGWDVDLQNLYNVGFDQGRSSNAFSSQPYTGSIEGSNIKMEM 447
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 4842224 4845300 - Hsped.02g04920.1 Hepe02g0492 561993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0492 447 MobiDBLite consensus disorder prediction 200 226 - -
Hepe02g0492 447 Coils Coil 22 42 - -
Hepe02g0492 447 MobiDBLite consensus disorder prediction 227 255 - -
Hepe02g0492 447 SMART finulus 252 302 IPR011598 GO:0046983(InterPro)
Hepe02g0492 447 Pfam Helix-loop-helix DNA-binding domain 250 297 IPR011598 GO:0046983(InterPro)
Hepe02g0492 447 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 246 296 IPR011598 GO:0046983(InterPro)
Hepe02g0492 447 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 315 IPR036638 GO:0046983(InterPro)
Hepe02g0492 447 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 136 369 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Hepe02g0492 447 Gene3D - 243 317 IPR036638 GO:0046983(InterPro)
Hepe02g0492 447 FunFam Basic helix-loop-helix transcription factor 243 315 - -
Hepe02g0492 447 MobiDBLite consensus disorder prediction 149 199 - -
Hepe02g0492 447 MobiDBLite consensus disorder prediction 129 255 - -
Hepe02g0492 447 CDD bHLH_AtBPE_like 236 321 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0492 Hepe-Chr2:4842224 Hepe10g1832 Hepe-Chr10:55051312 1.40e-46 dispersed
Hepe02g2543 Hepe-Chr2:72377186 Hepe02g0492 Hepe-Chr2:4842224 1.87e-49 transposed
Hepe03g1340 Hepe-Chr3:69805215 Hepe02g0492 Hepe-Chr2:4842224 3.29e-41 transposed
Hepe05g0559 Hepe-Chr5:7858536 Hepe02g0492 Hepe-Chr2:4842224 1.54e-39 transposed
Hepe05g1307 Hepe-Chr5:61222815 Hepe02g0492 Hepe-Chr2:4842224 1.92e-42 transposed
Hepe07g2084 Hepe-Chr7:65134691 Hepe02g0492 Hepe-Chr2:4842224 1.68e-35 transposed
Hepe02g0492 Hepe-Chr2:4842224 Hepe08g1014 Hepe-Chr8:9657898 4.89e-53 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
54971 PF00010 HLH 1.20E-06 No_clan Hepe TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0492 - - - 0.0