Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hepe02g0539 ATGGCCCGAGTAAACTTGGACGTTCCCCCTCCCTCTCCTTCTTCAGCTCTGCCCCTCCGTCGCTCCACGGTGGCCTCGCGTTTGGAAATTATGCTCTGCCCCTCCGTCGCTCCACGGTGGCCTCGCGTTTGGAAATTATGCTCTGCCCCTCCGTCGCTCCACGGTGGCCTCGCGTTTGGAAATTATGATGATCCGTATACTACTGCTGATAAGTGGCTTCTCAAAGAGGATCTTCCTCTTGCCTATCGGCAACAAGTGGTTGAATTCATACTCCAAAATTCTGGAAAAAAGAATGTTTCCCTTGATCCGTCTTTTCGTGATCCTTATACTGGCTCCAGTGCTTGTGTGCCTGGTGGACCTTCAAATGTTTCAGCTGAATCACATAAACCTATTTTCAAGCACATTCCTAAGGTATGCTATTACTACGTCATTGGGGATTATGATTGTATAGTTTATGCACCACACCCAGAAATGTTCACTTGA 483 48.24 MARVNLDVPPPSPSSALPLRRSTVASRLEIMLCPSVAPRWPRVWKLCSAPPSLHGGLAFGNYDDPYTTADKWLLKEDLPLAYRQQVVEFILQNSGKKNVSLDPSFRDPYTGSSACVPGGPSNVSAESHKPIFKHIPKVCYYYVIGDYDCIVYAPHPEMFT 160
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 5441870 5445772 + Hsped.02g05390.1 Hepe02g0539 562040

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Hepe02g0539 160 Pfam PFU (PLAA family ubiquitin binding) 57 97 IPR015155 -
Hepe02g0539 160 Gene3D - 52 103 IPR038122 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hepe02g0539 K14018 - - csv:101203376 139.813
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Hepe02g0539 Hepe-Chr2:5441870 HepeContig11g0001 Hepe-ChrContig11:10808 7.06e-39 dispersed
Hepe02g0537 Hepe-Chr2:5381056 Hepe02g0539 Hepe-Chr2:5441870 1.22e-43 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g551 . . . . . . . . . Cmo11g01321 . . . . . Cpe04g00250 . Bhi05g01185 . . . Hepe02g0539 . . Cla02g00551 Cam02g0575 Cec02g0577 Cco02g0588 Clacu02g0575 Cmu02g0571 Cre02g0902 Cone12ag1132 Cone8ag1178 . . . Csa07g00823 . Cme01g00001 Blo04g00503 . . Bda14g00539 Bpe15g00877 . Bma03g00538 . . . . Cma11g01785 . Car11g01066 . . . . . . . . . . . . . . . . . Lsi11g01064 . Chy01g00001 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0020877 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 2